ID:

mml-mir-628

Coordinate:

chr7:32545669-32545763 -

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.6 -40.2 -40.0

Sense Strand Reads

ACTATTATTTTCATATAGGACCAGCACCAGAATAGTCCTTAATATCGGAGATAGCTGTTGTGTCACTTCCTCATGCTGACATATTTACTAGAGGGTAAAATTAATAACCTTCTAGTAAGAGTGGCAGTCGAAGGGAAGGACTCATCTGACTTCTGGAAACCTATGTTAAAATAGAATGCTTTGAACCTTGATCGT

***********************************(((......(((((.........((.(((.((((((...((((.(((.(((((((((((((..........))))))))))))).))).))))....))))))))).))))))).....)))...***********************************
Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex
SRR116840

epididymis
SRR116845

epididymis
SRR116844

epididymis
SRR116842

seminal vesicle
SRR116841

prostate
SRR116839

testes
........................................................................ATGCTGACATATTTACTAGAGG..................................................................................................... 22 0 1 225.00 225 160 41 0 0 18 5 1
........................................................................ATGCTGACATATTTACTAGAG...................................................................................................... 21 0 1 198.00 198 130 51 0 0 5 11 1
........................................................................ATGCTGACATATTTACTAGAGGATC.................................................................................................. 25 2 1 160.00 160 0 0 130 30 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGA.................................................................................................... 23 1 1 129.00 129 95 22 1 0 7 3 1
........................................................................ATGCTGACATATTTACTAGAGA..................................................................................................... 22 1 1 86.00 86 75 8 0 0 2 1 0
........................................................................ATGCTGACATATTTACTAGA....................................................................................................... 20 0 1 54.00 54 40 11 0 0 2 1 0
........................................................................ATGCTGACATATTTACTAGAGGGT................................................................................................... 24 0 1 50.00 50 40 8 0 0 2 0 0
........................................................................ATGCTGACATATTTACTAGAGGT.................................................................................................... 23 1 1 31.00 31 13 11 0 0 3 3 1
........................................................................ATGCTGACATATTTACTAGAGGAA................................................................................................... 24 2 2 23.50 47 35 6 0 1 2 2 1
........................................................................ATGCTGACATATTTACTAGAGGGTATC................................................................................................ 27 2 1 18.00 18 0 0 14 4 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGG.................................................................................................... 23 0 1 16.00 16 15 1 0 0 0 0 0
........................................................................ATGCTGACATATTTACTATAG...................................................................................................... 21 1 1 15.00 15 11 3 0 0 0 1 0
........................................................................ATGCTGACATATTTACTAG........................................................................................................ 19 0 1 13.00 13 11 2 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGGA................................................................................................... 24 1 1 12.00 12 12 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGT..................................................................................................... 22 1 1 11.00 11 8 3 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGGATC................................................................................................. 26 3 1 10.00 10 0 0 6 4 0 0 0
........................................................................ATGCTGACATATTTACTAGAT...................................................................................................... 21 1 1 8.00 8 6 2 0 0 0 0 0
........................................................................ATGCTGACATATTTACTATAGG..................................................................................................... 22 1 1 6.00 6 6 0 0 0 0 0 0
.........................................................................TGCTGACATATTTACTAGAGGGA................................................................................................... 23 1 1 5.00 5 5 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGTA.................................................................................................... 23 2 1 5.00 5 4 1 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGATG..................................................................................................... 22 1 1 5.00 5 5 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGAA.................................................................................................... 23 2 2 4.50 9 9 0 0 0 0 0 0
.........................................................................TGCTGACATATTTACTAGAGGGATC................................................................................................. 25 3 1 4.00 4 0 0 3 1 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGTAT.................................................................................................. 25 3 1 4.00 4 2 1 0 0 0 0 1
.........................................................................TGCTGACATATTTACTAGAGGGTATC................................................................................................ 26 2 1 4.00 4 0 0 3 1 0 0 0
........................................................................ATGCTGACATATTTACTATAGGA.................................................................................................... 23 2 2 3.00 6 6 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGATC................................................................................................... 24 3 2 3.00 6 0 0 4 2 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGGTAA................................................................................................. 26 0 1 3.00 3 1 0 0 0 0 2 0
........................................................................ATGCTGACATATTTACTAGAGGGTAT................................................................................................. 26 1 1 3.00 3 3 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGTT................................................................................................... 24 1 1 3.00 3 0 2 0 0 0 1 0
.........................................................................TGCTGACATATTTACTAGAGGGAATC................................................................................................ 26 3 2 3.00 6 0 0 5 1 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGAT................................................................................................... 24 1 1 3.00 3 1 2 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAA...................................................................................................... 21 1 2 3.00 6 4 0 0 0 1 1 0
........................................................................ATGCTGACATATTTACTAGAGGGAT.................................................................................................. 25 2 1 3.00 3 2 1 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGGAATC................................................................................................ 27 3 2 2.50 5 0 0 4 1 0 0 0
.........................................................................TGCTGACATATTTACTAGAGGGT................................................................................................... 23 0 1 2.00 2 1 1 0 0 0 0 0
........................................................................ATGCTGACATATTTACTA......................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGATAATC............................................................................................... 28 3 1 2.00 2 0 0 2 0 0 0 0
........................................................................ATGCTGACATATTTACTATAGGGT................................................................................................... 24 1 1 2.00 2 1 0 0 0 0 0 1
........................................................................ATGCTGACATATTTACTAGAGGGTT.................................................................................................. 25 1 1 2.00 2 2 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGGAA.................................................................................................. 25 1 1 2.00 2 2 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGAC................................................................................................... 24 2 1 2.00 2 0 0 2 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGAAA.................................................................................................. 25 2 2 2.00 4 4 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGGTTT................................................................................................. 26 2 1 2.00 2 0 2 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGTA................................................................................................... 24 2 1 2.00 2 1 1 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGATGA.................................................................................................... 23 2 2 1.50 3 3 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGG....................................................................................................... 20 1 2 1.50 3 2 0 0 0 0 1 0
........................................................................ATGCTGACATATTTACTATA....................................................................................................... 20 1 2 1.50 3 3 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTATAGA..................................................................................................... 22 2 5 1.20 6 5 0 0 0 0 1 0
........................................................................ATGCTGACATACTTACTAGAG...................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATCTTTACTAGAGGATC.................................................................................................. 25 3 1 1.00 1 0 0 1 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGC..................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
........................................................................ATGCTGACACATTTACTAGAGGGT................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0
........................................................................ATGCTGACATACTTACTAGAGGGT................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGATGT.................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGCTC.................................................................................................. 25 2 1 1.00 1 0 0 1 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGCA.................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................ATGCCGACATATTTACTAGAGGA.................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
.........................................................................TGCTGACATATTTACTAGAGGATC.................................................................................................. 24 2 1 1.00 1 0 0 1 0 0 0 0
........................................................................ATGCTGTCATATTTACTAGAG...................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGAT.................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGATGG.................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................ATGCCGACATATTTACTAGAGGATC.................................................................................................. 25 3 1 1.00 1 0 0 0 1 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGATT.................................................................................................. 25 2 1 1.00 1 0 0 0 1 0 0 0
..............................................................................................................TCTAGTAAGAGTTGCAGTCGA................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGTCAT................................................................................................. 26 3 1 1.00 1 0 1 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGATGAT................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
..........................................................................GCTGACATATTTACTAGAGG..................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0
.........................................................................TGCTGACATATTTACTAGAGGGAT.................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGGC................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATATACTAGAGGGT................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGGTAG................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATCTACTAGAGGGA................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................ATGCTGACCTATTTACTAGAG...................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................CATGCTGACATATTTACTAGAG...................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGTTAA................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................TGCTGACATATTTACTAGAGGGAA.................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATTAACTAGAG...................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0
........................................................................ATGCTGACATATTTAC........................................................................................................... 16 0 2 1.00 2 0 2 0 0 0 0 0
........................................................................ATGCTGCCATATTTACTAGAG...................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGAC.................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGCCT.................................................................................................. 25 3 1 1.00 1 0 1 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGATGTT................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................ATGCTGACACATTTACTAGAGGA.................................................................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0
........................................................................ATGCTGACATATTTACTAGAGGATA.................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................TGCTGACATATTTACTAGAGGGCTC................................................................................................. 25 3 1 1.00 1 0 0 1 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGGTA.................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGGCC.................................................................................................. 25 2 1 1.00 1 0 0 0 0 0 1 0
........................................................................ATGCTGACATATTTACTAGATA..................................................................................................... 22 2 4 0.75 3 2 1 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGGAAG.................................................................................................. 25 3 2 0.50 1 0 0 0 0 1 0 0
........................................................................ATGCTGACTTATTTACTAGAGGATC.................................................................................................. 25 3 2 0.50 1 0 0 1 0 0 0 0
........................................................................ATGCTGACATACTTACTAGAGA..................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGCTA................................................................................................... 24 3 2 0.50 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATTTTTACTAGAGGATC.................................................................................................. 25 3 2 0.50 1 0 0 0 1 0 0 0
........................................................................ATGCTGACATATTTACTAGAGAAA................................................................................................... 24 3 5 0.40 2 2 0 0 0 0 0 0
.......................................................................CATGCTGACATATTTACTATAGT..................................................................................................... 23 2 3 0.33 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTATAGGATC.................................................................................................. 25 3 3 0.33 1 0 0 1 0 0 0 0
.........................................................................AGCTGACATATTTACTAGAGGATC.................................................................................................. 24 3 3 0.33 1 0 0 1 0 0 0 0
.........................................................................TGCTGACATATTTACTAGAGGAA................................................................................................... 23 2 3 0.33 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAATC.................................................................................................... 23 3 13 0.31 4 0 0 4 0 0 0 0
........................................................................ATGCTGACACATTTACTAGAGGAA................................................................................................... 24 3 4 0.25 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGAGAAG................................................................................................... 24 3 4 0.25 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAT........................................................................................................ 19 1 4 0.25 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTATAGT..................................................................................................... 22 2 5 0.20 1 0 1 0 0 0 0 0
........................................................................ATGCTGACATATTTAGTAGAGGAA................................................................................................... 24 3 5 0.20 1 0 1 0 0 0 0 0
........................................................................ATGCTGACATATTTACTATATG..................................................................................................... 22 2 6 0.17 1 0 1 0 0 0 0 0
........................................................................ATGCTGACATATTTACTATAT...................................................................................................... 21 2 16 0.13 2 0 2 0 0 0 0 0
........................................................................ATGCTGACATATTTACTATATGA.................................................................................................... 23 3 20 0.10 2 2 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTAGATTA.................................................................................................... 23 3 17 0.06 1 1 0 0 0 0 0 0
........................................................................ATGCTGACATATTTACTATAGTT.................................................................................................... 23 3 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

TGATAATAAAAGTATATCCTGGTCGTGGTCTTATCAGGAATTATAGCCTCTATCGACAACACAGTGAAGGAGTACGACTGTATAAATGATCTCCCATTTTAATTATTGGAAGATCATTCTCACCGTCAGCTTCCCTTCCTGAGTAGACTGAAGACCTTTGGATACAATTTTATCTTACGAAACTTGGAACTAGCA

***********************************(((......(((((.........((.(((.((((((...((((.(((.(((((((((((((..........))))))))))))).))).))))....))))))))).))))))).....)))...***********************************
Read size # Mismatch Hit Count Total Norm Total SRR116844

epididymis
........................................CTATAGCCTCTATCGACTA........................................................................................................................................ 19 2 14 0.07 1 1

Generated: 09/01/2015 at 12:27 PM