ID:

mml-mir-624

 Coordinate:

chr7:93718430-93718527 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-54.2 -54.2

Sense Strand Reads

TAATGAAAAAGAAAAAAGGTTTAAAAAGGATGTGCTTTTGACCAATATGTAATGCTGTTTCAAGGTAGTACCAGTATCTTGTGTTCAGTGGAACCAAGGTAAACACAAGATACTGGTATTACCTTGAGATAGCATTAACACCTAAGTGGTTTCAGTGAACAAGATTTAAAAGACTAGAATTAAAGCAATTATAAATGT

**************************************************(((((((((((((((((((((((((((((((((((...((....)).....)))))))))))))))))))))))))))))))))))...*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116841

prostate		 SRR116843

cortex		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116839

testes		 SRR116845

epididymis		 SRR116844

epididymis
.......................................................................................................CACAAGATACTGGTATTACCT.......................................................................... 21 0 1 6.00 6 1 2 1 1 1 0 0
.....................................................................................................AACACAAGATACTGGTATTACC........................................................................... 22 0 1 5.00 5 2 1 0 1 1 0 0
....................................................................................................AAACACAAGATACTGGTATTA............................................................................. 21 0 1 5.00 5 1 2 2 0 0 0 0
....................................................................................................AAACACAAGATACTGGTATT.............................................................................. 20 0 1 2.00 2 1 0 1 0 0 0 0
.....................................................................................................AACACAAGATACTGGTATTACCATC........................................................................ 25 2 1 2.00 2 0 0 0 0 0 2 0
....................................................................................................AAACACAAGATACTGGTATTAT............................................................................ 22 1 1 2.00 2 0 0 2 0 0 0 0
.....................................................................................................AACACAAGATACTGGTATTA............................................................................. 20 0 1 2.00 2 0 0 1 1 0 0 0
.................................................................TAGTACTAGTATCTTGTGTTCAA.............................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................TAGTACCAGTATCTTGTGT.................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................TAGTACCAGTATCTTGTGTTCA............................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................TAGTACCAGTATCTTTTGTTCA............................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................AACACAAGATACTGGTATTACT........................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0
....................................................................................................AAACACAACATACTGGTATTA............................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................AAACACAAGATGCTGGTATTAC............................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................AAACACAAGATACTGGTATTAC............................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................CACAAGATACTGGTATTACCTT......................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................................CACAGGATACTGGTATTACCT.......................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................CACAAGATACTGGTATTACCTTT........................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0
................................................................GTAGTACCAGTATCTTGTGTTATC.............................................................................................................. 24 3 2 0.50 1 0 0 0 0 0 0 1
....................................................................................................AAACACAGGATACTGGTATTA............................................................................. 21 1 2 0.50 1 0 0 1 0 0 0 0

Anti-sense strand reads

ATTACTTTTTCTTTTTTCCAAATTTTTCCTACACGAAAACTGGTTATACATTACGACAAAGTTCCATCATGGTCATAGAACACAAGTCACCTTGGTTCCATTTGTGTTCTATGACCATAATGGAACTCTATCGTAATTGTGGATTCACCAAAGTCACTTGTTCTAAATTTTCTGATCTTAATTTCGTTAATATTTACA

***********************************************************(((((((((((((((((((((((((((((((((((...((....)).....)))))))))))))))))))))))))))))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116844

epididymis
..................................................................................................CTATTGTGTTCTATGACCATGATG............................................................................ 24 3 2 0.50 1 1

Generated: 09/01/2015 at 12:27 PM