ID:

mml-mir-6130

 Coordinate:

chr3:23803112-23803220 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

TAATGGACACTTCGGTTGATTTAACGTCTTGGTTACTGTGAATAATGCTGCAATGAATGTGGAAATGCAGGCATCCCTTCTACATACTGATTTAATTTTCCTTGGATTTGTATCCAGTACTGAGGGAGTGGATTGTATGGTAGTTCTATTTTTAAATTTTCTGAGGAAACTCCATGTGGTTTTTCATAATAGCACTAATTTATATTCCC

***********************************..................((((.((((((.(((..(((((((((((.(((((((((..(((((.....)))))...)).))))).)).))))).))).)))...))).)))))).))))........(((....)))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116840

epididymis		 SRR116839

testes
........................................................................................................................TGAGGTAGTAGATTGTATGGTA................................................................... 22 2 4 15.25 61 21 12 13 15 0
........................................................................................................................TGAGGTAGTGGATTGTATAGTA................................................................... 22 2 3 6.00 18 3 10 2 3 0
........................................................................................................................TGAGGTAGTAGATTGTATGGTAA.................................................................. 23 3 6 3.67 22 6 7 8 1 0
........................................................................................................................TGAGGGAGTAGGTTGTATGGTA................................................................... 22 2 3 3.00 9 0 1 4 1 3
........................................................................................................................TGAGGGAGTAGATTGTATAGTA................................................................... 22 2 5 3.00 15 3 3 5 4 0
........................................................................................................................TGAGGTAGTGGGTTGTATGGTA................................................................... 22 2 3 2.00 6 2 1 1 2 0
........................................................................................................................TGAGGTAGTGGATTGTAT....................................................................... 18 1 8 1.75 14 2 7 2 3 0
........................................................................................................................TGAGGTAGTGGATTGTATAGTAA.................................................................. 23 3 5 1.40 7 1 5 0 1 0
........................................................................................................................TGAGGTAGTAGGTTGTATGGTAGT................................................................. 24 3 7 1.29 9 1 0 4 4 0
........................................................................................................................TGAGGTAGTAGATTGTATAGTAGTTCT.............................................................. 27 3 1 1.00 1 1 0 0 0 0
........................................................................................................................TGAGGTAGTTGATTGTATGGTA................................................................... 22 2 1 1.00 1 1 0 0 0 0
........................................................................................................................TGAGGGAGTGGATTGTATAGTT................................................................... 22 2 4 0.75 3 0 1 2 0 0
........................................................................................................................TGAGGGAGTAGGTTGTATGGTAA.................................................................. 23 3 6 0.67 4 0 1 3 0 0
........................................................................................................................TGAGGGAGTAGATTGTATAGTAG.................................................................. 23 2 2 0.50 1 1 0 0 0 0
........................................................................................................................TGAGGTAGTGGGTTGTATGGTAA.................................................................. 23 3 10 0.50 5 2 1 2 0 0
........................................................................................................................TGAGGTAGTGGATTGTA........................................................................ 17 1 11 0.36 4 1 1 2 0 0
........................................................................................................................TGAGGGAGTCGATTGTATAGT.................................................................... 21 2 3 0.33 1 0 0 1 0 0
........................................................................................................................TGAGGTAGCAGATTGTATGGTAGT................................................................. 24 3 3 0.33 1 0 0 1 0 0
........................................................................................................................TGAGGGAGTAGTTTGTATGGTAA.................................................................. 23 3 3 0.33 1 0 0 0 1 0
........................................................................................................................TGAGGGAGTAGATTGTATGGTT................................................................... 22 2 6 0.33 2 2 0 0 0 0
........................................................................................................................TGAGGGAGTAGATTGTATGGTG................................................................... 22 2 3 0.33 1 0 0 1 0 0
........................................................................................................................TGAGGGAGTAGATTGTAT....................................................................... 18 1 13 0.31 4 1 0 2 1 0
........................................................................................................................TGAGGCAGTGGATTGTATAGT.................................................................... 21 2 7 0.29 2 0 1 1 0 0
........................................................................................................................TGAGGGAGTCGGTTGTATGGT.................................................................... 21 2 4 0.25 1 0 0 1 0 0
........................................................................................................................TGAGGGAGTAGATTTTATGGT.................................................................... 21 2 4 0.25 1 1 0 0 0 0
........................................................................................................................TGAGGTAGTGGATTGTATGGTT................................................................... 22 2 4 0.25 1 1 0 0 0 0
........................................................................................................................TGAGGTAGTCGATTGTATCGTA................................................................... 22 3 5 0.20 1 1 0 0 0 0
.......................................................................................................................CTGAGGTAGTAGATTGTATGGT.................................................................... 22 2 5 0.20 1 0 1 0 0 0
........................................................................................................................TGAGGCAGTCGATTGTATAGTA................................................................... 22 3 6 0.17 1 0 0 0 1 0
........................................................................................................................TGAGGGAGTAGGTTGTGTGGTAG.................................................................. 23 3 6 0.17 1 0 0 0 1 0
........................................................................................................................TGAGGCAGTAGATTGTATCGTA................................................................... 22 3 10 0.10 1 0 1 0 0 0
........................................................................................................................TGAGGGTGTAGATTGTATAGTA................................................................... 22 3 15 0.07 1 0 1 0 0 0
........................................................................................................................GGAGGGAGTAGATTGTATAGTA................................................................... 22 3 16 0.06 1 0 0 0 1 0
........................................................................................................................TGAGGTAGTAGATTGTATGGAA................................................................... 22 3 20 0.05 1 0 0 1 0 0
........................................................................................................................AGAGGGAGTAGATTGTATAGTA................................................................... 22 3 20 0.05 1 0 0 0 1 0
........................................................................................................................TGAGGGGGTAGATTGTATAGTA................................................................... 22 3 20 0.05 1 1 0 0 0 0
........................................................................................................................TGAGGGAGTAGATTGTATAGAA................................................................... 22 3 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

ATTACCTGTGAAGCCAACTAAATTGCAGAACCAATGACACTTATTACGACGTTACTTACACCTTTACGTCCGTAGGGAAGATGTATGACTAAATTAAAAGGAACCTAAACATAGGTCATGACTCCCTCACCTAACATACCATCAAGATAAAAATTTAAAAGACTCCTTTGAGGTACACCAAAAAGTATTATCGTGATTAAATATAAGGG

***********************************..................((((.((((((.(((..(((((((((((.(((((((((..(((((.....)))))...)).))))).)).))))).))).)))...))).)))))).))))........(((....)))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:21 PM