ID:

mml-mir-6129

Coordinate:

chr16:35471441-35471549 -

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

ACTAGCTTCTGTCATCATAAGCCTTCTTGGTCCATGAGCCACCCAATTTTGTTCCTTCTAAGGATTCCATTGAGGGAGTTGAGTGTATAGGAAGGAAATCTTATTGTTCAAGTTTTCCTTTGAAACCTCTTAGAATGGAATAAAACTGCCCAAATCATAGAATTACAATTCTTTATCATCTTGTATCTCTAACTAGATGTAGATGTTAA

***********************************........((.((((((((((((((((((((((......)))))).((.((....((((((((.(((.......))).))))))))...))))))))))).))))))))).))..........(((((....)))))..***********************************
Read size # Mismatch Hit Count Total Norm Total SRR116842

seminal vesicle
SRR116843

cortex
SRR116840

epididymis
......................................................................TGAGGGAGTAGATTGTATAGGA..................................................................................................................... 22 2 3 0.33 1 1 0 0
......................................................................TGAGGTAGTTGATTGTATAGTAA.................................................................................................................... 23 3 10 0.10 1 0 1 0
......................................................................TGAGGTAGTAGAGTGTATAGTAA.................................................................................................................... 23 3 13 0.08 1 1 0 0
......................................................................TGAGGTAGTTGATTGTATAGAA..................................................................................................................... 22 3 16 0.06 1 0 1 0
......................................................................TGAGGGAGTAGATTGTATAGAA..................................................................................................................... 22 3 20 0.05 1 0 0 1

Anti-sense strand reads

TGATCGAAGACAGTAGTATTCGGAAGAACCAGGTACTCGGTGGGTTAAAACAAGGAAGATTCCTAAGGTAACTCCCTCAACTCACATATCCTTCCTTTAGAATAACAAGTTCAAAAGGAAACTTTGGAGAATCTTACCTTATTTTGACGGGTTTAGTATCTTAATGTTAAGAAATAGTAGAACATAGAGATTGATCTACATCTACAATT

***********************************........((.((((((((((((((((((((((......)))))).((.((....((((((((.(((.......))).))))))))...))))))))))).))))))))).))..........(((((....)))))..***********************************
Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:13 PM