ID:

mml-mir-582

Coordinate:

chr6:57779118-57779215 -

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.0

Sense Strand Reads

CCTGCTGAACACCACTAGCAAATCTCTGTCTAGTAGACCACAACAAGTCAATCTGTGCTCTTTGATTACAGTTGTTCAACCAGTTACTAATCTACCTAATTGTAACTGGTTGAACAACTGAACCCAAAGGGTGCAAAGTAGAAACATTTCGTGAAGTCGGCTGGGGACAAAGAAAACACCACCAGAACCCCCTTCAAT

**************************************************...(((((((((((....(((((((((((((((((((..............)))))))))))))))))))....)))))))))))..*************************************************************
Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis
SRR116840

epididymis
SRR116842

seminal vesicle
SRR116843

cortex
SRR116841

prostate
SRR116844

epididymis
SRR116839

testes
......................................................................................................TAACTGGTTGAACAACTGAA............................................................................ 20 0 1 195.00 195 0 138 45 3 8 0 1
.................................................................TTACAGTTGTTCAACCAGTTACTATC........................................................................................................... 26 2 1 182.00 182 165 0 0 0 0 17 0
......................................................................................................TAACTGGTTGAACAACTGAAC........................................................................... 21 0 1 60.00 60 0 23 23 7 7 0 0
......................................................................................................TAACTGGTTGAACAACTGA............................................................................. 19 0 1 49.00 49 0 29 15 1 1 0 3
..................................................................TACAGTTGTTCAACCAGTTACTATC........................................................................................................... 25 2 1 44.00 44 41 0 0 0 0 3 0
......................................................................................................TAACTGGTTGAACAACTGAACCATC....................................................................... 25 3 1 36.00 36 31 0 0 0 0 5 0
.................................................................TTACAGTTGTTCAACCAGTTACATC............................................................................................................ 25 3 1 26.00 26 21 0 0 0 0 5 0
.................................................................TTACAGTTGTTCAACCAGTTA................................................................................................................ 21 0 1 26.00 26 0 14 7 2 3 0 0
..................................................................TACAGTTGTTCAACCAGTTACT.............................................................................................................. 22 0 1 24.00 24 0 8 6 6 4 0 0
......................................................................................................TAACTGGTTGAACAACTGAACCC......................................................................... 23 0 1 23.00 23 0 3 1 16 3 0 0
.................................................................TTACAGTTGTTCAACCAGTTACT.............................................................................................................. 23 0 1 23.00 23 0 10 6 1 6 0 0
......................................................................................................TAACTGGTTGAACAACTGAAA........................................................................... 21 1 3 17.00 51 0 22 25 1 3 0 0
.................................................................TTACAGTTGTTCAACCAGTT................................................................................................................. 20 0 1 15.00 15 0 7 6 0 2 0 0
......................................................................................................TAACTGGTTGAACAACTGAACC.......................................................................... 22 0 1 12.00 12 0 4 5 1 2 0 0
......................................................................................................TAACTGGTTGAACAACTGAACCCATC...................................................................... 26 2 1 10.00 10 8 0 0 0 0 2 0
..................................................................TACAGTTGTTCAACCAGTTA................................................................................................................ 20 0 1 9.00 9 0 8 0 0 1 0 0
......................................................................................................TAACTGGTTGAACAACTGAACATC........................................................................ 24 3 1 9.00 9 7 0 0 0 0 2 0
......................................................................................................TAACTGGTTGAACAACTGAACAA......................................................................... 23 2 2 8.50 17 0 10 5 2 0 0 0
.................................................................TTACAGTTGTTCAACCAGTATC............................................................................................................... 22 2 1 8.00 8 7 0 0 0 0 1 0
......................................................................................................TAACTGGTTGAACAACTGAACA.......................................................................... 22 1 1 7.00 7 0 2 4 0 1 0 0
.................................................................TTACAGTTGTTCAACCAGTTACTAC............................................................................................................ 25 1 1 6.00 6 5 0 0 0 0 1 0
......................................................................................................TAACTGGTTGAACAACTGAATC.......................................................................... 22 1 1 6.00 6 4 0 0 0 0 2 0
.................................................................TTACAGTTGTTCAACCAGTTATC.............................................................................................................. 23 2 2 5.50 11 9 0 0 0 0 2 0
.......................................................................................................AACTGGTTGAACAACTGAA............................................................................ 19 0 1 4.00 4 0 3 1 0 0 0 0
.................................................................TTACAGTTGTTCAACCAGTTACTA............................................................................................................. 24 0 1 4.00 4 3 0 0 0 1 0 0
..................................................................TACAGTTGTTCAACCAGTTACTAC............................................................................................................ 24 1 1 4.00 4 4 0 0 0 0 0 0
.......................................................................................................AACTGGTTGAACAACTGAACCC......................................................................... 22 0 1 3.00 3 0 1 0 2 0 0 0
.................................................................TTACCGTTGTTCAACCAGTTACTATC........................................................................................................... 26 3 1 3.00 3 3 0 0 0 0 0 0
.......................................................................................................AACTGGTTGAACAACTGAAC........................................................................... 20 0 1 3.00 3 0 2 0 1 0 0 0
......................................................................................................TAACTGGTTGAACAACTGAAAA.......................................................................... 22 2 6 2.50 15 0 7 6 1 1 0 0
..................................................................TACAGTTGTTCAACCAGTT................................................................................................................. 19 0 1 2.00 2 0 1 1 0 0 0 0
................................................................ATTACAGTTGTTCAACCAGTT................................................................................................................. 21 0 1 2.00 2 0 1 0 1 0 0 0
.................................................................TTACAGTTGTTCAACCAGTTAA............................................................................................................... 22 1 1 2.00 2 0 1 1 0 0 0 0
......................................................................................................TAACTGGTTGAACAACTGAAG........................................................................... 21 1 1 2.00 2 0 1 1 0 0 0 0
..................................................................TACAGTTGTTCAACCCGTTACTATC........................................................................................................... 25 3 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................................AACTGGTTGAACAACTGAACCCATC...................................................................... 25 2 1 2.00 2 2 0 0 0 0 0 0
......................................................................................................TAACTGGTTGAACAACTGAAT........................................................................... 21 1 1 2.00 2 0 0 2 0 0 0 0
.................................................................TTACAGTTGTTCAACCAGTTAATC............................................................................................................. 24 2 1 2.00 2 2 0 0 0 0 0 0
..................................................................TACAGTTGTTCAACCAGTTACATC............................................................................................................ 24 3 3 1.33 4 2 0 0 0 0 2 0
.................................................................TTACAGTTGTTCAACCAGTTACTAA............................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................TAACTGGTTGAACAACTGAACCCCTC...................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................TTACAGTTGTTCAACCAGTG................................................................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................TAACTGGTTGAACAACTCAACCC......................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0
......................................................................................................TAACTGGTTGAACAACTGAGC........................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
.................................................................TTCCAGTTGTTCAACCAGTTACTATC........................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................TTACAGTTGTTCAACCAGTTACCATC........................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................TTACAGTTGTTCAACCAG................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................TTACAGTTGTTCAACCAGTTT................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................ACTGGTTGAACAACTGAACC.......................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................TAACTGGTTGAACAACTGAACCAAA....................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................AACTGGTTGAACAACTGA............................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................TTACAGTTGTTCAACCAGTTAAGTATC.......................................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TAACTGGTTGAACAACTGCA............................................................................ 20 1 2 1.00 2 0 1 0 1 0 0 0
..................................................................TACAGTTGTTCAACCAGTTAA............................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................TTACAGTTGTTCAACCAGTTACTATT........................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TAACTGGTTGAACAACTGAACCCAAA...................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................TTACAGTTGTTCAACCCGTTAC............................................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0
..................................................................TACAGCTGTTCAACCAGTTACTATC........................................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................TTACAGTTGTTCAACCAGTTAATATC........................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
..................................................................TACAGTTGTTCAACCAGTTATTATC........................................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0 0
................................................................ATTACAGTTGTTCAACCAGTTAATC............................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TAACTGGTTGAACAACTGAACCCA........................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................TAACTGGTTGCACAACTGA............................................................................. 19 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................TAACTGGTTGAAAAACTGAAC........................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................TAACTGGTTGAACAACTGAACCGT........................................................................ 24 2 1 1.00 1 0 0 1 0 0 0 0
.................................................................TTACAGTTGTTCAACCAGTTAGTATC........................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TAACTGGTTGAACAACTGAACCCT........................................................................ 24 1 1 1.00 1 0 0 0 0 1 0 0
......................................................................................................TAACTGGTTGAACCACTGAACCC......................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
.................................................................TTACAGTTGTTCAACCAGTTACA.............................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................TAACTGGTTGAAAAACTGAA............................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................ATAACTGGTTGAACAACTGAA............................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................TAACTGGTTGAACAACTGAACCCAA....................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................TTACAGTTGTTCAACCACTTA................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................GTAACTGGTTGAACAACTGAAC........................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................TAACTGGTTGACCAACTGAATC.......................................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0
.................................................................TTACAGTTGTTCAACCAGTTACAATC........................................................................................................... 26 3 3 1.00 3 3 0 0 0 0 0 0
......................................................................................................TAACTGGTTGAACAACTGCAC........................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................TAACTGGTTGAACAATTGAA............................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................TTACAGTTGTTCAACCATTTACTATC........................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................TTACAGTTGTTCAACCAGCTACT.............................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................TTACAGTTGTTCAACCAGTTAAAAATC.......................................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TAACTGGTTGAGCAACTGAA............................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................AACTGGTTGAACAACTGAACCCA........................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................TTACAGTTGTTCAACCAGTTACGTC............................................................................................................ 25 3 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TAACTGGTTTAACAACTGAA............................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................TAACTGGTTGAATAACTGAA............................................................................ 20 1 1 1.00 1 0 0 1 0 0 0 0
...................................................................ACAGTTGTTCAACCAGTTACTATC........................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
..................................................................TACAGTTGTTCAACCAGTTATC.............................................................................................................. 22 2 3 0.67 2 2 0 0 0 0 0 0
......................................................................................................TAACTGGTTCAACAACTGA............................................................................. 19 1 2 0.50 1 0 1 0 0 0 0 0
.................................................................TTACAGTTGTTCAACCAGTAAATC............................................................................................................. 24 3 2 0.50 1 1 0 0 0 0 0 0
.................................................................TTACAGTTGTTCACCCAGTTACTATC........................................................................................................... 26 3 2 0.50 1 0 0 0 0 0 1 0
.....................................................................................................GTAACTGGTTGAACAACTGAAAA.......................................................................... 23 2 2 0.50 1 0 0 1 0 0 0 0
.......................................................................................................AACTGGTTGAACAACTGAACCATC....................................................................... 24 3 2 0.50 1 0 0 0 0 0 1 0
.................................................................TTACAGTTGTTCAACCAGCTACTATC........................................................................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0
......................................................................................................TAACTGGTTGAACAACTGAAGTCG........................................................................ 24 3 2 0.50 1 0 0 1 0 0 0 0
.............................................AGTCAATCTGTGCTCTTTGAATC.................................................................................................................................. 23 2 2 0.50 1 1 0 0 0 0 0 0
.................................................................TTACAGTTGTTCAACCAGTA................................................................................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0
.................................................................GTACAGTTGTTCAACCAGTTACTATC........................................................................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................GTAACTGGTTGAACAACTGAAA........................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0
......................................................................................................TAACTGGTTGAACAACTG.............................................................................. 18 0 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................AACTGGTTGAACAACTGAAA........................................................................... 20 1 3 0.33 1 0 0 0 1 0 0 0
......................................................................................................TAACTGGTTGAACAAC................................................................................ 16 0 3 0.33 1 0 1 0 0 0 0 0
.................................................................TTACAGTTGTTCAACCACTT................................................................................................................. 20 1 3 0.33 1 0 0 1 0 0 0 0
......................................................................................................TAATTGGTTGAACAACTGAA............................................................................ 20 1 3 0.33 1 0 1 0 0 0 0 0
......................................................................................................TAACTGGTTGAACAATTGA............................................................................. 19 1 3 0.33 1 0 1 0 0 0 0 0
......................................................................................................TAACTGGTTGAACAA................................................................................. 15 0 5 0.20 1 0 0 1 0 0 0 0
......................................................................................................TAACTGGTTGAACCCCTGAA............................................................................ 20 2 7 0.14 1 0 0 1 0 0 0 0

Anti-sense strand reads

GGACGACTTGTGGTGATCGTTTAGAGACAGATCATCTGGTGTTGTTCAGTTAGACACGAGAAACTAATGTCAACAAGTTGGTCAATGATTAGATGGATTAACATTGACCAACTTGTTGACTTGGGTTTCCCACGTTTCATCTTTGTAAAGCACTTCAGCCGACCCCTGTTTCTTTTGTGGTGGTCTTGGGGGAAGTTA

*************************************************************...(((((((((((....(((((((((((((((((((..............)))))))))))))))))))....)))))))))))..**************************************************
Read size # Mismatch Hit Count Total Norm Total SRR116842

seminal vesicle
SRR116840

epididymis
SRR116845

epididymis
SRR116843

cortex
SRR116841

prostate
SRR116844

epididymis
.................................................................AAAGTCAACAAGTTGGTCAAT................................................................................................................ 21 1 3 17.00 51 25 22 0 1 3 0
................................................................AAAAGTCAACAAGTTGGTCAAT................................................................................................................ 22 2 6 2.50 15 6 7 0 1 1 0
..................................................................................................CTACATTGACCAACTTGTTGACAT............................................................................ 24 3 3 1.33 4 0 0 2 0 0 2
...............................................................CTAAAGTCAACAAGTTGGTCAAT................................................................................................................ 23 1 1 1.00 1 0 0 1 0 0 0
.................................................................................................CTAACATTGACCAACTTGTTGACATT........................................................................... 26 3 3 1.00 3 0 0 3 0 0 0
..................................................................ACGTCAACAAGTTGGTCAAT................................................................................................................ 20 1 2 1.00 2 0 1 0 1 0 0
..................................................................ATGTCAACAAGTTGGTCAAT................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
.................................................................AAAGTCAACAAGTTGGTCAATG............................................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0
..............................................................GCTGAAGTCAACAAGTTGGTCAAT................................................................................................................ 24 3 2 0.50 1 1 0 0 0 0 0
.................................................................................................CTATCATTGACCAACTTGTTGACATG........................................................................... 26 3 2 0.50 1 0 0 1 0 0 0
................................................................AAAAGTCAACAAGTTGGTCAATG............................................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0
....................................................................GTCAACAAGTTGGTCAAT................................................................................................................ 18 0 2 0.50 1 0 1 0 0 0 0
......................................................................CAACAAGTTGGTCAAT................................................................................................................ 16 0 3 0.33 1 0 1 0 0 0 0
.................................................................AAAGTCAACAAGTTGGTCAA................................................................................................................. 20 1 3 0.33 1 0 0 0 1 0 0
.......................................................................AACAAGTTGGTCAAT................................................................................................................ 15 0 5 0.20 1 1 0 0 0 0 0
...............................................................CTAATGTCAAGAAGTTG...................................................................................................................... 17 1 20 0.10 2 0 0 0 0 0 2
...............................................................TTAAAGTCAACAATTTGGTCAAT................................................................................................................ 23 3 19 0.05 1 0 0 0 0 1 0

Generated: 09/01/2015 at 12:25 PM