ID:

mml-mir-577

 Coordinate:

chr5:108859184-108859279 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.6 -45.1 -45.0

Sense Strand Reads

ATGTGCTGGGGGGCGGAGGAAGTTTCAGGTACCCAATGGCAGGCTGCATTTGGGGGAATGAAGAGTAGATAAAATATTGGTACCTGATGAGTGTGAGGCCAGGTTTCAATACTTTATCTGCTCTTCATTTTCCCATATCTACTTACTTTAGGTATGGCCTCATTAAAAAATATAAACTCTCTGAAGACAGAACATT

*************************************************.(((((((((((((((((((((((.((((((.(((((.............))))).)))))).)))))))))))))))))))))))....********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116844

epididymis
................................................................GTAGATAAAATATTGGTACCTGT............................................................................................................. 23 1 1 20.00 20 12 7 1 0
................................................................GTAGATAAAATATTGGTACCTG.............................................................................................................. 22 0 1 13.00 13 6 7 0 0
................................................................GTAGATAAAATATTGGTACCTGA............................................................................................................. 23 0 1 7.00 7 3 4 0 0
.................................................................TAGATAAAATATTGGTACCTGA............................................................................................................. 22 0 1 5.00 5 4 1 0 0
.................................................................TAGATAAAATATTGGTACCTG.............................................................................................................. 21 0 1 3.00 3 1 2 0 0
................................................................GTAGATAAAATATTGGTACCT............................................................................................................... 21 0 1 3.00 3 2 0 1 0
...............................................................AGTAGATAAAATATTGGTACCT............................................................................................................... 22 0 1 2.00 2 0 2 0 0
................................................................GTAGATAAAATATTGGTACCTT.............................................................................................................. 22 1 1 2.00 2 2 0 0 0
...............................................................AGTAGATAAAATATTGGTACCTGT............................................................................................................. 24 1 1 1.00 1 1 0 0 0
.......................................................................................................TTTCAATACTTTATCTGCTCT........................................................................ 21 0 1 1.00 1 1 0 0 0
................................................................GTAGATAAAATCTTGGTACCTGT............................................................................................................. 23 2 1 1.00 1 1 0 0 0
.....................................................................................................GGTTTCAATACTTTATCTGCT.......................................................................... 21 0 1 1.00 1 1 0 0 0
................................................................GTAGATAAAATTTTGGTACC................................................................................................................ 20 1 1 1.00 1 0 1 0 0
................................................................GTAGATAAAATATTTGTACCTGA............................................................................................................. 23 1 1 1.00 1 1 0 0 0
.................................................................TAGGTAAAATATTGGTACCTG.............................................................................................................. 21 1 1 1.00 1 0 1 0 0
......................................................................................................GTTTCAATACTTTATCTGCTCT........................................................................ 22 0 1 1.00 1 1 0 0 0
................................................................GTAGATAAAATATTGGTACC................................................................................................................ 20 0 1 1.00 1 0 1 0 0
................................................................GTAGATAAAATATTGGTACCTGTAA........................................................................................................... 25 3 1 1.00 1 1 0 0 0
................................................................GTAGATAAAATATTGTTACCTGT............................................................................................................. 23 2 2 0.50 1 1 0 0 0
................................................................GTAGATAAAATATTGGTACCTTT............................................................................................................. 23 2 3 0.33 1 1 0 0 0
.....................................................................................................GGTTTCAATACTTTATCTGT........................................................................... 20 1 3 0.33 1 0 1 0 0
................................................................GTAGATAAAATATTGGTACCTATC............................................................................................................ 24 3 5 0.20 1 0 0 0 1
...................................................................GATAAAATATTGGTACCTGTA............................................................................................................ 21 2 7 0.14 1 1 0 0 0
................................................................................................................................................................................CGCTCTGAAGACAGAA.... 16 1 20 0.05 1 0 1 0 0

Anti-sense strand reads

TACACGACCCCCCGCCTCCTTCAAAGTCCATGGGTTACCGTCCGACGTAAACCCCCTTACTTCTCATCTATTTTATAACCATGGACTACTCACACTCCGGTCCAAAGTTATGAAATAGACGAGAAGTAAAAGGGTATAGATGAATGAAATCCATACCGGAGTAATTTTTTATATTTGAGAGACTTCTGTCTTGTAA

*********************************************************.(((((((((((((((((((((((.((((((.(((((.............))))).)))))).)))))))))))))))))))))))....************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:24 PM