ID:

mml-mir-576

 Coordinate:

chr5:103707676-103707770 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-60.6 -60.2 -60.2
mature

  1. chr17:39854975-39854995 +
  2. chr5:40068890-40068910 +
  3. mml-mir-576  chr5:103707730-103707750 +
  4. chr6:63380575-63380595 -
  5. chrX:36307203-36307223 +
  6. chrX:139855726-139855746 -
star

Sense Strand Reads

TTAACTTTTGAGAAACTGCCAAACTGTTTTCCAAAGTAACTGCACCATTTTACAATCCAGTGAGGATTCTAATTTCTCCACATCTTTGGTAATAAGTTTTGGCAAAGATGTGGAAAAATTGGAATCCTCATTGGATTGGTTATAATACATCCTAGTGGATGTAAAGTGGTATCTCGTTGTTTTGATTTTCATTTT

***********************************.........(((((...(((((((((((((((((((((((.((((((((((((.(((......))).)))))))))))).)))))))))))))))))))))))...............)))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116845

epididymis		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116841

prostate
........................................................................................................AAGATGTGGAAAAATTGGAAT...................................................................... 21 0 6 0.83 5 2 0 1 1 1
........................................................................................................AAGATGTGGAAAAATTGGAATCATC.................................................................. 25 1 3 0.67 2 0 2 0 0 0
........................................................................................................AAGATGTGGAAAAATTGGAATC..................................................................... 22 0 5 0.60 3 1 0 1 1 0
........................................................................................................AAGATGTGGAATAATTGGAATC..................................................................... 22 1 6 0.17 1 1 0 0 0 0
...........................................................................................................ATGTGGAAAAATTGGAATCCT................................................................... 21 0 12 0.08 1 1 0 0 0 0
........................................................................................................AAGATGTGGAAAAATTTGAAT...................................................................... 21 1 18 0.06 1 1 0 0 0 0
........................................................................................................AAGATGTGGAAAAATTGGAA....................................................................... 20 0 20 0.05 1 0 0 1 0 0
........................................................................................................AAGATGTGGAAAAATTGGA........................................................................ 19 0 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

AATTGAAAACTCTTTGACGGTTTGACAAAAGGTTTCATTGACGTGGTAAAATGTTAGGTCACTCCTAAGATTAAAGAGGTGTAGAAACCATTATTCAAAACCGTTTCTACACCTTTTTAACCTTAGGAGTAACCTAACCAATATTATGTAGGATCACCTACATTTCACCATAGAGCAACAAAACTAAAAGTAAAA

***********************************.........(((((...(((((((((((((((((((((((.((((((((((((.(((......))).)))))))))))).)))))))))))))))))))))))...............)))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:24 PM