ID:

mml-mir-551a

 Coordinate:

chr1:6674386-6674481 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-62.8 -62.6 -62.6

Sense Strand Reads

CTCGCGGCCAACCCCTGAGGCTGTTCCTGGCTGCTCCGGTGGCTGCCAGAGGGGACTGCCGGGTGACCCTGGAAATCCAGAGTGGGTGGGGCCTGTCTGACCATTTCTAGGCGACCCACTCTTGGTTTCCAGGGTTGCCCTGGAAACCACAGATGGGGAGGGGTTGATGGCACCCAGCCTCCCCCAAGCCTGGGAA

***********************************(((((((...((((.((......)).((((((((((((((((.(((((((((...(((((............))))).))))))))).))))))))))))))))))))...))))...))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116841

prostate		 SRR116842

seminal vesicle		 SRR116840

epididymis		 SRR116839

testes		 SRR116845

epididymis
..............................................................................................................GCGACCCACTCTTGGTTTCCA................................................................. 21 0 1 61.00 61 20 20 14 7 0 0
..............................................................................................................GCGACCCACTCTTGGTTTCC.................................................................. 20 0 1 18.00 18 4 5 3 5 1 0
..............................................................................................................GCGACCCACTCTTGGTTTC................................................................... 19 0 1 11.00 11 5 4 1 1 0 0
..............................................................................................................GCGACCCACTCTTGGTTT.................................................................... 18 0 1 8.00 8 2 0 5 1 0 0
..............................................................................................................GCGACCCACTCTTGGTTTCCAT................................................................ 22 1 1 4.00 4 1 2 0 1 0 0
..............................................................................................................GCGACCCACTCTTGTTTTCCA................................................................. 21 1 1 2.00 2 0 1 0 1 0 0
..............................................................................................................GCGACCCACTCTTGGTT..................................................................... 17 0 1 2.00 2 1 0 0 1 0 0
..............................................................................................................GCGACCCACTCTTGGTTA.................................................................... 18 1 1 2.00 2 1 0 1 0 0 0
..............................................................................................................GCGACCCACTCTTGGTTTTC.................................................................. 20 1 1 2.00 2 0 0 2 0 0 0
..............................................................................................................GCGACCCACTCTTGGTTTCCC................................................................. 21 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................................GCGACCCACTCTTGGTTTCT.................................................................. 20 1 1 1.00 1 0 0 1 0 0 0
..............................................................................................................GCGACCCACTCTTGGTTTCCATC............................................................... 23 2 1 1.00 1 0 0 0 0 0 1
..............................................................................................................GCGACCCACTCTTTGTTTCCA................................................................. 21 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................................GCGACCCACTCTTGGTTTCCAA................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
..............................................................................................................GCGACCCACTCTTGGTTTCGA................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................GCGACCCACTCTTGGTTTCCT................................................................. 21 1 2 1.00 2 1 1 0 0 0 0
..............................................................................................................GCGACCCCCTCTTGGTTTCC.................................................................. 20 1 1 1.00 1 0 0 1 0 0 0
..............................................................................................................GCGACCCACTCTTGGTTTCA.................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..............................................................................................................GCGACCCACTCTTTGTTTCC.................................................................. 20 1 2 0.50 1 0 1 0 0 0 0
..............................................................................................................GCGACCCACTCTTGGTTTAA.................................................................. 20 2 5 0.20 1 1 0 0 0 0 0
..............................................................................................................GCGACCCACTCTTGGTTTCAT................................................................. 21 2 5 0.20 1 0 0 0 1 0 0
..............................................................................................................GCGACCCACTCTTGGTTCCA.................................................................. 20 2 7 0.14 1 0 1 0 0 0 0

Anti-sense strand reads

GAGCGCCGGTTGGGGACTCCGACAAGGACCGACGAGGCCACCGACGGTCTCCCCTGACGGCCCACTGGGACCTTTAGGTCTCACCCACCCCGGACAGACTGGTAAAGATCCGCTGGGTGAGAACCAAAGGTCCCAACGGGACCTTTGGTGTCTACCCCTCCCCAACTACCGTGGGTCGGAGGGGGTTCGGACCCTT

***********************************(((((((...((((.((......)).((((((((((((((((.(((((((((...(((((............))))).))))))))).))))))))))))))))))))...))))...))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:02 PM