ID:

mml-mir-548i

 Coordinate:

chr3:9672271-9672328 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-49.4 -49.4 -48.9

Sense Strand Reads

GGCAGCTGGGATCAGAAATACAAACGAACAAGTAACTGTTAGGTTGGTGCAAAGGTCATTGCAGATTTTGCCATTACTTTTAGTGGCAAAATCGTCTATGACTTTTGCACCATCCTAATATCTAGCTAACAGGTCTCTCAGCTGCTCATCTCTGTTCC

************************************(((((((.(((((((((((((((....(((((((((((((....)))))))))))))....))))))))))))))).)))))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116843

cortex		 SRR116841

prostate		 SRR116845

epididymis		 SRR116839

testes		 SRR116844

epididymis
...................................................AAGGTCATTGCAGATTTTG........................................................................................ 19 0 1 9.00 9 4 5 0 0 0 0 0
..................................................AAAGGTCATTGCAGATTTTG........................................................................................ 20 0 1 9.00 9 4 1 3 1 0 0 0
..................................................AAAGGTCATTGCAGATTTTGCC...................................................................................... 22 0 1 6.00 6 2 0 1 3 0 0 0
..................................................AAAGGTCATTGCAGATTTTGCCA..................................................................................... 23 0 1 6.00 6 1 3 1 1 0 0 0
......................................................................................CAAAATCGTCTATGACTTTTG................................................... 21 0 1 4.00 4 3 1 0 0 0 0 0
......................................................................................CAAAATCGTCTATGACTTTTGATC................................................ 24 2 1 3.00 3 0 0 0 0 2 0 1
...................................................AAGGTCATTGCAGATTTTGC....................................................................................... 20 0 1 2.00 2 0 0 1 0 0 1 0
...................................................AAGGTCATTGCAGATTTTGCCA..................................................................................... 22 0 1 2.00 2 0 1 1 0 0 0 0
.....................................................................................GCAAAATCGTCTATGACTTTTGATC................................................ 25 2 1 2.00 2 0 0 0 0 2 0 0
..................................................AAAGGTCATTGCAGATTTT......................................................................................... 19 0 1 2.00 2 1 1 0 0 0 0 0
...................................................AAGGTCATTGCAGATTTTGCC...................................................................................... 21 0 1 2.00 2 0 1 1 0 0 0 0
.....................................................................................GCAAAATCGTCTATGACTTTTG................................................... 22 0 1 2.00 2 0 0 2 0 0 0 0
...................................................AAGGGCATTGCAGATTTTGCC...................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
..................................................AAAGGTCATTGCAGATTTTGC....................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0
..................................................AAAGGTCATTGCAGATTTTGCCT..................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
...................................................AAGGTCATTGCAGATTTTGCCAT.................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................................CAAAATCGTCTATGACTTTTGA.................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0
...................................................AAGGTCATTGCAGATTTTTCC...................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
..................................................AAAGGACATTGCAGATTTTGCCA..................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0
......................................................................................CAGAATCGTCTATGACTTTTG................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
...................................................AAGGTCATTGCAGATTTTGA....................................................................................... 20 1 3 0.67 2 2 0 0 0 0 0 0
..................................................AAAGGTCATTGCAGATTTTT........................................................................................ 20 1 3 0.67 2 1 0 0 1 0 0 0
..................................................AAAGGTCATTGCAGATTTTGA....................................................................................... 21 1 2 0.50 1 0 0 1 0 0 0 0
...................................................AAGGTCATTGCAGATTTTGT....................................................................................... 20 1 3 0.33 1 0 1 0 0 0 0 0
..................................................AAAGGTCGTTGCAGATTTTGA....................................................................................... 21 2 4 0.25 1 1 0 0 0 0 0 0
...................................................AAGGTCATTGCAGATTTTTCA...................................................................................... 21 2 9 0.11 1 0 0 0 1 0 0 0
...................................................AAGGTCATTGCAGATTTTGAAA..................................................................................... 22 2 11 0.09 1 1 0 0 0 0 0 0
..................................................AAAGGTCATTGCAGATTTTGATC..................................................................................... 23 3 15 0.07 1 0 0 0 0 1 0 0

Anti-sense strand reads

CCGTCGACCCTAGTCTTTATGTTTGCTTGTTCATTGACAATCCAACCACGTTTCCAGTAACGTCTAAAACGGTAATGAAAATCACCGTTTTAGCAGATACTGAAAACGTGGTAGGATTATAGATCGATTGTCCAGAGAGTCGACGAGTAGAGACAAGG

************************************(((((((.(((((((((((((((....(((((((((((((....)))))))))))))....))))))))))))))).)))))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR116844

epididymis
................CTATGGTTGCTTGTTCATT........................................................................................................................... 19 2 15 0.07 1 1

Generated: 09/01/2015 at 12:20 PM