ID:

mml-mir-548h

 Coordinate:

chr13:24985525-24985582 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.1 -39.2 -39.1
mature

star

  1. chr12:53654791-53654809 -
  2. mml-mir-548h  chr13:24985525-24985543 +
  3. chr2:94150866-94150884 +
  4. chr5:151115895-151115913 -
  5. chr7:125649287-125649305 -

Sense Strand Reads

GTCACTTTCTGTTTATCTGTGCAATGAGGATGGTTGTATTAGGTTGGTGCAGAAGTAATTGCTGTTTTTGCCATTACTTTTAAAGACAAAAACTGCAGTGACTTCTGTGCCAACCTAACAGTATCTACGTAAGGGGTTGTTCTGAGGTTTACATGAGT

***********************************...((((((((((((((((((.(((((.(((((((................))))))).))))).))))))))))))))))))...************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116841

prostate		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116839

testes		 SRR116844

epididymis
......................................................................................CAAAAACTGCAGTGACTTCT.................................................... 20 0 1 101.00 101 91 3 3 3 1 0
......................................................................................CAAAAACTGCAGTGACTTCTGT.................................................. 22 0 1 97.00 97 86 6 2 2 1 0
......................................................................................CAAAAACTGCAGTGACTTCTG................................................... 21 0 1 23.00 23 21 0 1 1 0 0
......................................................................................CAAAAACTGCAGTGACTTC..................................................... 19 0 1 13.00 13 12 1 0 0 0 0
......................................................................................CAAAAACTGCAGTGACTT...................................................... 18 0 1 5.00 5 4 1 0 0 0 0
......................................................................................CAAAAACTGCAGTGACTTCTTT.................................................. 22 1 1 3.00 3 3 0 0 0 0 0
......................................................................................CAAAAGCTGCAGTGACTTCTGT.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
......................................................................................CAAAAACTGCAGCGACTTCT.................................................... 20 1 1 2.00 2 2 0 0 0 0 0
......................................................................................CAAAAACTGCAGTGACTTCTT................................................... 21 1 1 2.00 2 2 0 0 0 0 0
......................................................................................CAAAGACTGCAGTGACTTCT.................................................... 20 1 2 1.50 3 3 0 0 0 0 0
......................................................................................CAAAAACTGCAGCGACTTCTGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
......................................................................................CAAAAACTGCATTGACTTCTG................................................... 21 1 1 1.00 1 1 0 0 0 0 0
......................................................................................CAAAAACTGCATTGACTTCTGT.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
......................................................................................CAAAAACTGCAGTGACTTCTGTATC............................................... 25 2 1 1.00 1 0 0 0 0 0 1
.......................................................................................AAAAACTGCAGTGACTTCTGT.................................................. 21 0 1 1.00 1 1 0 0 0 0 0
......................................................................................CAGAAACTGCAGTGACTTCTGTA................................................. 23 2 2 0.50 1 1 0 0 0 0 0
......................................................................................CAAAAACTGCAGTGGCTTCT.................................................... 20 1 2 0.50 1 1 0 0 0 0 0
..................................................AGAAGTAATTGCTGTTTTT......................................................................................... 19 0 5 0.40 2 2 0 0 0 0 0
..................................................AGAAGTAATTGCTGTTTTTGCCA..................................................................................... 23 0 4 0.25 1 1 0 0 0 0 0
......................................................................................CAAAAACTGCAGTGACTTCTGAA................................................. 23 2 5 0.20 1 1 0 0 0 0 0
..................................................AGAAGTAATTGCTGTTTTTG........................................................................................ 20 0 5 0.20 1 1 0 0 0 0 0
..................................................AGAAGTAATTTCTGTTTTTGC....................................................................................... 21 1 8 0.13 1 1 0 0 0 0 0
......................................................................................CAAAAACTGCAGTGACTTTTGT.................................................. 22 1 9 0.11 1 0 0 1 0 0 0
..................................................AGAAGTAATTGCTGTTTTTCCT...................................................................................... 22 2 18 0.06 1 1 0 0 0 0 0
......................................................................................CAAAAACTGCAGTGACTTTTG................................................... 21 1 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

CAGTGAAAGACAAATAGACACGTTACTCCTACCAACATAATCCAACCACGTCTTCATTAACGACAAAAACGGTAATGAAAATTTCTGTTTTTGACGTCACTGAAGACACGGTTGGATTGTCATAGATGCATTCCCCAACAAGACTCCAAATGTACTCA

*************************************...((((((((((((((((((.(((((.(((((((................))))))).))))).))))))))))))))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex
.....................................................................................TGTTTTTGACGTCACTGAAGA.................................................... 21 0 1 1.00 1 1
...................................................................................ACTGTTTTTGACGTCACTGAAGA.................................................... 23 1 3 0.33 1 1

Generated: 09/01/2015 at 12:09 PM