ID:

mml-mir-548g

 Coordinate:

chr13:17105868-17105922 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-45.3

Sense Strand Reads

CAACCTCAATCTTACAACTCCAAGGAACTACATGCCATTAGATTGGTGCAAGAGTAATTGTGGTTTCTGTCATGAAAAGTATGGCAAAAACCATAATTACTTTTGCACCGACCTAATACCAACAAGCAGATAAGCTTGGAAAACACCCCTGAACT

***********************************.(((((.((((((((((((((((((((((((.(((((((.....))))))).)))))))))))))))))))))))).)))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116839

testes		 SRR116841

prostate		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116843

cortex		 SRR116844

epididymis
.................................................AAGAGTAATTGTGGTTTCTGT..................................................................................... 21 0 1 22.00 22 7 8 5 1 1 0
.................................................AAGAGTAATTGTGGTTTCTGTC.................................................................................... 22 0 1 14.00 14 7 3 2 2 0 0
..................................................AGAGTAATTGTGGTTTCTGTCA................................................................................... 22 0 1 8.00 8 1 4 3 0 0 0
..................................................AGAGTAATTGTGGTTTCTGT..................................................................................... 20 0 1 7.00 7 2 2 1 0 2 0
.................................................AAGAGTAATTGTGGTTTCTGTCA................................................................................... 23 0 1 6.00 6 4 0 2 0 0 0
..................................................AGAGTAATTGTGGTTTCTGTC.................................................................................... 21 0 1 5.00 5 2 1 2 0 0 0
.................................................AAGAGTAATTGTGGTTTCTGTA.................................................................................... 22 1 1 4.00 4 3 0 0 1 0 0
.................................................AAGAGTAATTGTGGTTTCTGTCT................................................................................... 23 1 2 2.50 5 2 3 0 0 0 0
.................................................AAGAGTAATTGTGGTTTCTTTC.................................................................................... 22 1 2 2.50 5 3 0 2 0 0 0
.................................................AAGAGTAATTGTGGTTTCTGTAA................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
.................................................AAGAGTAATTGTGGTTTCTG...................................................................................... 20 0 1 2.00 2 0 1 1 0 0 0
.................................................AAGAGTAATTGTGGTTTCTTT..................................................................................... 21 1 4 1.50 6 2 1 2 0 1 0
.................................................AAGAGTAATTGTGGTTTCT....................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
.................................................AAGAGTAATTGTGGTTTCTTTCA................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................AGAGTAATTGTGGTTTCTTTCA................................................................................... 22 1 2 1.00 2 0 1 0 0 1 0
..................................................AGAGTAATTGTGGTTTCTTTC.................................................................................... 21 1 3 0.33 1 1 0 0 0 0 0
.................................................AAGAGTAATTGTGGTTTCTTTCT................................................................................... 23 2 4 0.25 1 1 0 0 0 0 0
.................................................AAGAGTAATTGTGGTTTCTT...................................................................................... 20 1 9 0.22 2 2 0 0 0 0 0
.................................................AAGAGTAATTGTGGTTTCTTTA.................................................................................... 22 2 6 0.17 1 0 1 0 0 0 0
..................................................AGAGTAATTGTGGTTTCTTT..................................................................................... 20 1 6 0.17 1 1 0 0 0 0 0
.................................................AAGAGTAATTGTGGTTTCTGTATC.................................................................................. 24 3 13 0.15 2 0 0 0 0 0 2
.................................................AGGAGTAATTGTGGTTTCTTT..................................................................................... 21 2 16 0.13 2 0 2 0 0 0 0
..................................................AGAGTAATTGTGGTTTCTGAA.................................................................................... 21 2 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

GTTGGAGTTAGAATGTTGAGGTTCCTTGATGTACGGTAATCTAACCACGTTCTCATTAACACCAAAGACAGTACTTTTCATACCGTTTTTGGTATTAATGAAAACGTGGCTGGATTATGGTTGTTCGTCTATTCGAACCTTTTGTGGGGACTTGA

***********************************.(((((.((((((((((((((((((((((((.(((((((.....))))))).)))))))))))))))))))))))).)))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:08 PM