ID:

mml-mir-545

Coordinate:

chrX:73947273-73947378 -

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

GTTAGACTGTGAGCTCCTTGAGGGCAAGGAAGGTGTCTTCATCTCCAGAGCCCAGCCTGGCACATTAGTAGGCCTCAGTAAATGTTTATTAGATGAATAAATGAATGACTCATCAGCAAACATTTATTGTGTGCCTGCTAAAGTGAGCTCCACAGGCTCTGGACTGTCAACTGTTTCTTCAAAAAGCATGTGGTCAGAAACTTGAT

***********************************........(((((((((.....((((((.(((((((((..((((((((((((.((.(((((.............))))))).))))))))))))...))))))))).)))....)))..)))))))))........***********************************
Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis
SRR116839

testes
SRR116840

epididymis
..........................................................................TCAGTAAATGTTTATTAGATGATC............................................................................................................ 24 2 2 2.50 5 5 0 0
..TAGACTGTAAGCTCCTTGAGGGCAAGGAAA.............................................................................................................................................................................. 30 2 3 0.33 1 0 1 0
................................................................................................................TCAGCAAACATTTATTGTGTGCATC..................................................................... 25 2 5 0.20 1 1 0 0
..TAGACTGTGAGCTCCTTGAGGACAA................................................................................................................................................................................... 25 1 12 0.17 2 0 1 1

Anti-sense strand reads

CAATCTGACACTCGAGGAACTCCCGTTCCTTCCACAGAAGTAGAGGTCTCGGGTCGGACCGTGTAATCATCCGGAGTCATTTACAAATAATCTACTTATTTACTTACTGAGTAGTCGTTTGTAAATAACACACGGACGATTTCACTCGAGGTGTCCGAGACCTGACAGTTGACAAAGAAGTTTTTCGTACACCAGTCTTTGAACTA

***********************************........(((((((((.....((((((.(((((((((..((((((((((((.((.(((((.............))))))).))))))))))))...))))))))).)))....)))..)))))))))........***********************************
Read size # Mismatch Hit Count Total Norm Total SRR116840

epididymis
SRR116842

seminal vesicle
SRR116843

cortex
SRR116841

prostate
SRR116844

epididymis
.AATCTGACACTCGAGGAGCT......................................................................................................................................................................................... 20 1 20 0.50 10 5 2 3 0 0
..ATCTGACACTCGAGGAA........................................................................................................................................................................................... 17 0 20 0.25 5 1 1 0 2 1
.AATCTGACACTCGAGGAA........................................................................................................................................................................................... 18 0 20 0.05 1 0 1 0 0 0

Generated: 09/01/2015 at 12:34 PM