ID:

mml-mir-544

 Coordinate:

chr7:164947069-164947159 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.2 -33.0 -32.9
mature

star

  1. chr13:25689722-25689742 +
  2. chr15:26546082-26546102 -
  3. chr2:118219865-118219885 -
  4. chr4:23041745-23041765 +
  5. mml-mir-544  chr7:164947087-164947107 +
  6. chrX:10800937-10800957 -

Sense Strand Reads

TGAATTGTTGGCTAGAGTAGTATTTCTCAAACTTTAAAAATGCTCCTAAGATTTTCATCACCTAGGGATCTTGTTAAAAAGCAGATTCTGATTCAGGGACCAAGATTCTGCATTTTTAGCAAGTTCTCAAGTGATGCTAATGCCACCGGTCTGTCGACAACACGTGCAGCGGTTCAGGGCTGGAGACCAGG

*****************************************************..((((((...((((.((((((((((((((((.(((.............))).))))).))))))))))).))))..))))))....*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116840

epididymis		 SRR116841

prostate		 SRR116845

epididymis		 SRR116842

seminal vesicle		 SRR116844

epididymis
........................................................................................................ATTCTGCATTTTTAGCAAGTT.................................................................. 21 0 1 18.00 18 17 1 0 0 0 0
....................................................................TCTTGTTAAAAAGCAGATTCT...................................................................................................... 21 0 6 6.17 37 28 5 3 0 1 0
.....................................................................CTTGTTAAAAAGCAGATTCTGATT.................................................................................................. 24 0 1 2.00 2 2 0 0 0 0 0
.....................................................................CTTGTTAAAAAGCAGATTCTGAT................................................................................................... 23 0 3 1.33 4 2 1 1 0 0 0
.....................................................................CTTGTTAAAAAGCAGATTCTGATTCAG............................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................ATTCTGCATTTTTAGCAAGTTT................................................................. 22 1 3 0.67 2 1 0 1 0 0 0
....................................................................TCTTGTTAAAAAGCAGATTCTGAT................................................................................................... 24 0 3 0.33 1 1 0 0 0 0 0
........................TCTCAAACTTTAAATATGATC.................................................................................................................................................. 21 2 11 0.27 3 0 0 0 2 0 1
.....................................................................CTTGTTAAAAAGCAGATTCTGA.................................................................................................... 22 0 4 0.25 1 1 0 0 0 0 0
........................................................................................................ATTCTGCATTTTTAGCAATTT.................................................................. 21 1 5 0.20 1 1 0 0 0 0 0
.......................TTCTCAAACTTTAAATATGATC.................................................................................................................................................. 22 2 5 0.20 1 0 0 0 1 0 0
.....................................................................CTTGTTAAAAAGCAGATTCTTATT.................................................................................................. 24 1 5 0.20 1 1 0 0 0 0 0
.....................................................................CTTGTTAAAAAGCAGATTCTGT.................................................................................................... 22 1 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

ACTTAACAACCGATCTCATCATAAAGAGTTTGAAATTTTTACGAGGATTCTAAAAGTAGTGGATCCCTAGAACAATTTTTCGTCTAAGACTAAGTCCCTGGTTCTAAGACGTAAAAATCGTTCAAGAGTTCACTACGATTACGGTGGCCAGACAGCTGTTGTGCACGTCGCCAAGTCCCGACCTCTGGTCC

***************************************************..((((((...((((.((((((((((((((((.(((.............))).))))).))))))))))).))))..))))))....***************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:31 PM