ID:

mml-mir-542

 Coordinate:

chrX:133863537-133863633 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.0 -33.0 -32.9

Sense Strand Reads

TCTTTAGGGGTCATGGGTGATACAGAAATTTGGGATCAGTCAAGGATGCACAGACCTCAGACATCTCGGGGATCATCATGTCACGAGATACCACTGTGCACTTGTGACAGATTGATAACTGAAAGGTCTGGGAGCCATTCATCTTCATAGCAAAACACGTGGTAAGTATTACAAGACGAATCAATGAAACTATCAGG

**************************************************.....(((((((...((((..((((...(((((((((.(((....)))..)))))))))...))))..))))...))))))).......********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116844

epididymis		 SRR116845

epididymis		 SRR116840

epididymis		 SRR116841

prostate		 SRR116839

testes		 SRR116842

seminal vesicle		 SRR116843

cortex
......................................................................................................TGTGACAGATTGATAACTGAATC........................................................................ 23 2 2 45.50 91 54 37 0 0 0 0 0
......................................................................................................TGTGACAGATTGATAACTGAAA......................................................................... 22 0 1 45.00 45 0 0 17 11 6 7 4
......................................................................................................TGTGACAGATTGATAACTGAAATC....................................................................... 24 2 1 42.00 42 30 12 0 0 0 0 0
.................................................................TCGGGGATCATCATGTCACGAGAATC.......................................................................................................... 26 2 1 35.00 35 16 19 0 0 0 0 0
......................................................................................................TGTGACAGATTGATAACTGAAAATC...................................................................... 25 3 3 26.33 79 29 50 0 0 0 0 0
.....................................................................................................TTGTGACAGATTGATAACTGAATC........................................................................ 24 2 1 22.00 22 13 9 0 0 0 0 0
......................................................................................................TGTGACAGATTGATAACTGAA.......................................................................... 21 0 1 18.00 18 0 0 7 6 2 2 1
......................................................................................................TGTGACAGATTGATAACTGA........................................................................... 20 0 1 15.00 15 0 0 7 4 3 0 1
.....................................................................................................TTGTGACAGATTGATAACTGAAATC....................................................................... 25 2 1 9.00 9 3 6 0 0 0 0 0
.....................................................................................................TTGTGACAGATTGATAACTGAAAATC...................................................................... 26 3 1 6.00 6 1 5 0 0 0 0 0
......................................................................................................TGTGACAGATTGATAACTGAAATATC..................................................................... 26 2 1 5.00 5 2 3 0 0 0 0 0
......................................................................................................TGTGACAGATTGATAACTGATC......................................................................... 22 2 1 4.00 4 2 2 0 0 0 0 0
.................................................................TCGGGGATCATCATGTCACGAGATC........................................................................................................... 25 1 1 4.00 4 2 2 0 0 0 0 0
......................................................................................................TGTGACAGATTGATAACTGAAAT........................................................................ 23 1 1 4.00 4 0 0 0 3 0 1 0
.....................................................................................................TTGTGACAGATTGATAACTGA........................................................................... 21 0 1 3.00 3 0 0 2 0 1 0 0
......................................................................................................TGTGACAGATTGATAACTGAAAAATC..................................................................... 26 2 1 2.00 2 0 2 0 0 0 0 0
.............................................ATGCACAGACCTCAGACATC.................................................................................................................................... 20 0 1 2.00 2 0 0 0 0 1 1 0
.................................................................TCGGGGTTCATCATGTCACGAGAATC.......................................................................................................... 26 3 1 2.00 2 0 2 0 0 0 0 0
......................................................................................................TGTGACAGATTGATAACTGAAAA........................................................................ 23 1 1 2.00 2 0 0 0 1 0 0 1
.................................................................TCGGGGATCATCATGTCACGAATC............................................................................................................ 24 3 1 1.00 1 0 1 0 0 0 0 0
.................................................................TCGGGGATCATCATCTCACGAGATC........................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................TTGTGACAGATTGATAACTGAAAGTC...................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0
.................................................................TCGGGAATCATCATGTCACGAGATC........................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TGTGACAGATTGATAACTGAAACTC...................................................................... 25 3 1 1.00 1 0 1 0 0 0 0 0
.................................................................TCGGGGATCATCATGTCACGAG.............................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 1 0
......................................................................................................TGTGACAGATTGATAATTGAAAGATC..................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................TGTGACAGATTGATAACTTAAA......................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0
......................................................................................................TGTGACAGATTGATAACTGAAAATT...................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................TGTGACATATTGATAACTGAAA......................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0
.....................................................................................................TTGTGACAGATTGATAACTGATC......................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TGTGGCAGATTGATAACTGAAAG........................................................................ 23 1 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................TGTGACAGATTGATAGCTGAAA......................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
.................................................................TCGGGGATCATCATGTCACGATC............................................................................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................TGTGACGGATTGATAACTGAAATATC..................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................TCGGGGATCCTCATGTCACGAGA............................................................................................................. 23 1 1 1.00 1 0 0 0 1 0 0 0
.................................................................TCGGGGATCATCATGTCACGAGACTC.......................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0
.................................................................TCGGGGATCATCATGTCACTAGAATC.......................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TGTGACAGATTAATAACTGAA.......................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
.................................................................TCGGGGATCATCATGTCACGAGAA............................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TGTGACATATTGATAACTGAAAGATC..................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................TCGGGGATCATCATTTCACGAAATC........................................................................................................... 25 3 1 1.00 1 0 1 0 0 0 0 0
.................................................................TCGGGGATCATCATGTCCCGA............................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0
......................................................................................................TGTGACAGATTGATAACTGAAAAA....................................................................... 24 2 2 0.50 1 0 0 0 0 0 1 0
......................................................................................................TGTGACAGATTGATAACTGATT......................................................................... 22 2 4 0.50 2 0 0 0 0 2 0 0
......................................................................................................TGTGACAGATTGATAAC.............................................................................. 17 0 3 0.33 1 0 0 0 1 0 0 0
......................................................................................................TGTGACAGATTGATACCTGAATC........................................................................ 23 3 6 0.17 1 1 0 0 0 0 0 0
......................................................................................................TGTCACAGATTGATAACTGAATC........................................................................ 23 3 7 0.14 1 1 0 0 0 0 0 0
......................................................................................................TGTGATAGATTGATAACTGAATC........................................................................ 23 3 8 0.13 1 1 0 0 0 0 0 0
....................................................................GGGATCATCATGTCACGAATC............................................................................................................ 21 3 12 0.08 1 1 0 0 0 0 0 0

Anti-sense strand reads

AGAAATCCCCAGTACCCACTATGTCTTTAAACCCTAGTCAGTTCCTACGTGTCTGGAGTCTGTAGAGCCCCTAGTAGTACAGTGCTCTATGGTGACACGTGAACACTGTCTAACTATTGACTTTCCAGACCCTCGGTAAGTAGAAGTATCGTTTTGTGCACCATTCATAATGTTCTGCTTAGTTACTTTGATAGTCC

**********************************************************.....(((((((...((((..((((...(((((((((.(((....)))..)))))))))...))))..))))...))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis
..............................ATCCTAGTCAGCTACTACGTG.................................................................................................................................................. 21 3 6 0.17 1 1

Generated: 09/01/2015 at 12:35 PM