ID:

mml-mir-541

 Coordinate:

chr7:164962858-164962941 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.1 -39.1 -38.5

Sense Strand Reads

CCCTTGCTCCACTTGTAGCAAGATGCAGAGGGCTCTCTGAGCTCATGCCAACGTCAGGGAAAGGATTCTGCTGTCGGTCCCACTCCAAAGTGCATAGAATGGGTGGTGGGCACAGAATCCGGACTCTGCTTGTGGCATCTGTCGTCCGGCCCGATGCTTGTTGGCTGCCCGCTCCAGAAGGCGC

********************************************((((((....(((((...((((((((.((((....((((.(((............)))))))..))))))))))))...)))))....))))))..******************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116840

epididymis		 SRR116841

prostate		 SRR116842

seminal vesicle		 SRR116839

testes		 SRR116845

epididymis
.......................................................................................................TGGTGGGCACAGAATCCGGACT........................................................... 22 0 1 67.00 67 66 0 0 1 0 0
.......................................................................................................TGGTGGGCACAGAATCCGGACA........................................................... 22 1 1 38.00 38 35 1 2 0 0 0
...........................................................AAAGGATTCTGCTGTCGGTCCCA...................................................................................................... 23 0 1 27.00 27 24 3 0 0 0 0
...........................................................AAAGGATTCTGCTGTCGGTCCCACT.................................................................................................... 25 0 1 27.00 27 25 0 2 0 0 0
...........................................................AAAGGATTCTGCTGTCGGTCCCAT..................................................................................................... 24 1 1 23.00 23 16 4 1 2 0 0
...........................................................AAAGGATTCTGCTGTCGGT.......................................................................................................... 19 0 1 18.00 18 14 0 3 1 0 0
...........................................................AAAGGATTCTGCTGTCGGTCCCAC..................................................................................................... 24 0 1 15.00 15 13 0 2 0 0 0
...........................................................AAAGGATTCTGCTGTCGGTC......................................................................................................... 20 0 1 14.00 14 9 4 1 0 0 0
...........................................................AAAGGATTCTGCTGTCGGTA......................................................................................................... 20 1 1 10.00 10 5 5 0 0 0 0
.......................................................................................................TGGTGGGCACAGAATCCGGA............................................................. 20 0 1 8.00 8 8 0 0 0 0 0
...........................................................AAAGGATTCTGCTGTCGGTAA........................................................................................................ 21 2 1 7.00 7 6 1 0 0 0 0
.......................................................................................................TGGTGGGCACAGAATCCGGAC............................................................ 21 0 1 6.00 6 6 0 0 0 0 0
...........................................................AAAGGATTCTGCTGTCGGTAT........................................................................................................ 21 2 1 5.00 5 4 1 0 0 0 0
...........................................................AAAGGATTCTGCTGTCGGTCCC....................................................................................................... 22 0 1 5.00 5 4 1 0 0 0 0
.......................................................................................................TGGTGGGCACAGAATCCGGAAA........................................................... 22 2 1 4.00 4 3 1 0 0 0 0
.......................................................................................................TGGTGGGCACAGAATCCGG.............................................................. 19 0 1 3.00 3 2 0 0 1 0 0
...........................................................AAAGGATTCTGCTGTCGGTCA........................................................................................................ 21 1 1 3.00 3 1 1 1 0 0 0
.......................................................................................................TGGTGGGCACAGAATCCGGACTTT......................................................... 24 1 1 3.00 3 2 0 0 1 0 0
...........................................................AAAGGATTCTGCTGTCGGTCCCCCT.................................................................................................... 25 1 1 3.00 3 3 0 0 0 0 0
...........................................................AAAGGATTCTGCTGTCGGTT......................................................................................................... 20 1 1 3.00 3 1 2 0 0 0 0
.......................................................................................................TGGTGGGCACAGAATCCGGAA............................................................ 21 1 1 2.00 2 2 0 0 0 0 0
.....................................................................................................GGTGGTGGGCACAGAATCCGGA............................................................. 22 0 1 2.00 2 2 0 0 0 0 0
...........................................................CAAGGATTCTGCTGTCGGT.......................................................................................................... 19 1 1 2.00 2 0 1 0 1 0 0
...........................................................AAAGGATTCTGCTGTCGGTCCCAA..................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
.......................................................................................................TGGTGGGCACAGAATCCGGACTA.......................................................... 23 1 1 2.00 2 2 0 0 0 0 0
...........................................................AAAGGATTCTGCTGTCGGTCAT....................................................................................................... 22 2 1 2.00 2 0 2 0 0 0 0
............................................................AAGGATTCTGCTGTCGGTCCCACT.................................................................................................... 24 0 1 2.00 2 1 1 0 0 0 0
...........................................................AAAGGATTCTGCTGTCGGTCCCT...................................................................................................... 23 1 1 2.00 2 1 0 1 0 0 0
.......................................................................................................TGGTGGGCACAGAATCCGGACAT.......................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.......................................................................................................TGGTGGGCACAGAATCCGGACAA.......................................................... 23 2 1 1.00 1 1 0 0 0 0 0
...........................................................AAAGGATTCTGCTGTCGGTCCCATC.................................................................................................... 25 2 1 1.00 1 0 0 0 0 0 1
.....................................................................................................GGTGGTGGGCACAGAATCCGGAAT........................................................... 24 1 1 1.00 1 1 0 0 0 0 0
...........................................................CAAGGATTCTGCTGTCGGTCCCA...................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
.....................................................................................................GGTGGTGGGCACAGAATCCGGAT............................................................ 23 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................TGGGTGGTGGGCACAGAATCCGGA............................................................. 24 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TGGTGGGCACAGAATCCGGATAA.......................................................... 23 3 1 1.00 1 1 0 0 0 0 0
.....................................................................................................GGTGGTGGGCACAGAATCCGGAA............................................................ 23 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................GTGGTGGGCACAGAATCCGG.............................................................. 20 0 1 1.00 1 1 0 0 0 0 0
...........................................................CAAGGATTCTGCTGTCGGTCCCAT..................................................................................................... 24 2 1 1.00 1 0 0 0 1 0 0
...........................................................CAAGGATTCTGCTGTCGGTC......................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0
...........................................................AAAGGATTCTGCTGTCGGTCCCCT..................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...........................................................AAAGGATTCTGCTGTCGGTCCCC...................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................GTGGTGGGCACAGAATCCGGTA............................................................ 22 2 1 1.00 1 1 0 0 0 0 0
...........................................................AAAGGATTCTGTTGTCGGTCA........................................................................................................ 21 2 1 1.00 1 0 0 0 0 1 0
...........................................................AAAGGATTCTGCTGTCGGTCT........................................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0
.......................................................................................................TGGTGGGCACAGAATCCGGCCT........................................................... 22 1 1 1.00 1 0 1 0 0 0 0
......................................................................................................GTGGTGGGCACAGAATCCGGAA............................................................ 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TGGTGGGCACAGAATCCGGACTACT........................................................ 25 3 1 1.00 1 1 0 0 0 0 0
............................................................AAGGATTCTGCTGTCGGTCCCA...................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TTGTGGGCACAGAATCCGGACT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TGGTGGGCACAGAATCCGGACG........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................AAAGGATTCTGCTGTCGTTCCC....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TGGTGGGCACAGAATTCGGACT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................AAAGGATTCTGCTTTCGGTCCCAC..................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TGGTGGGCACAGAATCCGGACTTTA........................................................ 25 2 1 1.00 1 1 0 0 0 0 0
...........................................................AAAGGATTCTGTTGTCGGTCCCACT.................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
...........................................................AAAGGGTTCTGCTGTCGGT.......................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................CTGGTGGGCACAGAATCCGGACT........................................................... 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................AAAGGATTCTGCTGTCGGTCCCATT.................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0
...........................................................AAAGGATTCTGCTGTCCGTCCCAT..................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0
...........................................................AAAGGATTCTGCTGTCTGTCCCA...................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................GGTGGGCACAGAATCCGGACT........................................................... 21 0 1 1.00 1 1 0 0 0 0 0
...........................................................AAAGGATTCTGCTGTCGGTCC........................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TGGTGGGCACAGAATCCGGACTT.......................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.......................................................................................................TGGTGGGCACAGAATCCGGAAT........................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...........................................................CAAGGATTCTGCTGTCGGTA......................................................................................................... 20 2 3 0.67 2 0 0 0 2 0 0
...........................................................CAAGGATTCTGCTGTCGTTCCCA...................................................................................................... 23 2 2 0.50 1 0 0 0 1 0 0
.......................................................................................................TGGTGGGCACAGAATCCGA.............................................................. 19 1 3 0.33 1 1 0 0 0 0 0
.......................................................................................................TGGTGGGCACAGAATCCGGAAAT.......................................................... 23 3 4 0.25 1 1 0 0 0 0 0
...........................................................AAAGGATTCTGCTGTCGGTAAA....................................................................................................... 22 3 17 0.18 3 2 1 0 0 0 0
...........................................................AAAGGATTCCGCTGTTGGT.......................................................................................................... 19 2 13 0.08 1 1 0 0 0 0 0
...........................................................AAAGGATTCTGCTTTCTGTC......................................................................................................... 20 2 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

GGGAACGAGGTGAACATCGTTCTACGTCTCCCGAGAGACTCGAGTACGGTTGCAGTCCCTTTCCTAAGACGACAGCCAGGGTGAGGTTTCACGTATCTTACCCACCACCCGTGTCTTAGGCCTGAGACGAACACCGTAGACAGCAGGCCGGGCTACGAACAACCGACGGGCGAGGTCTTCCGCG

********************************************((((((....(((((...((((((((.((((....((((.(((............)))))))..))))))))))))...)))))....))))))..******************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:31 PM