ID:

mml-mir-524

 Coordinate:

chr19:59594913-59594997 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-40.3 -39.7
mature

  1. mml-mir-524  chr19:59544902-59544922 +
  2. mml-mir-524  chr19:59594926-59594946 +
star

  1. mml-mir-524  chr19:59544939-59544960 +
  2. mml-mir-524  chr19:59594963-59594984 +

Sense Strand Reads

GGTTAAGGAAAATTTCCACAAGAAATGCAGAGTACTGGAGCAAGAAGATTTCATGCTGTGACCCTACAAAGGCAAGCACTTTCTCTTGTCTAAAAGAAAAGAAGGTGCTTCCCTTTGCAGTGTTACGGTTTGAGAAAAGCAACGTTGAAGTCAATGCTGATCTTGGTAATACATTTGCAGCTCAT

************************************************(((((.((((((((.((.((((((.((((((((((((((......))))...)))))))))).)))))).)).)))))))).)))))..************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR116840

epididymis		 SRR116839

testes		 SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116843

cortex
...............................................................CTACAAAGGCAAGCACTTTCT..................................................................................................... 21 0 2 41.50 83 66 13 4 0 0
...............................................................CTACAAAGGCAAGCACTTTCTC.................................................................................................... 22 0 2 4.50 9 1 4 2 0 2
...............................................................CTACAAAGGCAAGCACTTTCTCT................................................................................................... 23 0 2 3.00 6 3 3 0 0 0
...............................................................CTACAAAGGCAAGCACTTTC...................................................................................................... 20 0 2 3.00 6 5 0 0 1 0
...............................................................CTACAAAGGCAAGCACTTT....................................................................................................... 19 0 2 2.00 4 4 0 0 0 0
...............................................................CTACAAAGGCAAGCACTTTCA..................................................................................................... 21 1 2 1.00 2 1 1 0 0 0
...........................................GAAGATTTCATGCTGTGACC.......................................................................................................................... 20 0 2 1.00 2 0 2 0 0 0
...............................................................CTACAAAGGCAAGCACTTTCTCA................................................................................................... 23 1 2 1.00 2 1 0 0 1 0
....................................................................................................GAAGGTGCTTCCCTTTGCAGTG............................................................... 22 0 2 1.00 2 1 1 0 0 0
...............................................................CTACAAAGGCAAGCACTTTAA..................................................................................................... 21 2 6 0.50 3 3 0 0 0 0
................................................................TACAAAGGCAAGCACTTTCTCT................................................................................................... 22 0 2 0.50 1 1 0 0 0 0
...............................................................CTACAAAGGCAAGCACTTTCTCTT.................................................................................................. 24 0 2 0.50 1 0 1 0 0 0
................................................................TACAAAGGCAAGCACTTTCT..................................................................................................... 20 0 2 0.50 1 1 0 0 0 0
................................................................TACAAAGGCAAGCACTTTCTC.................................................................................................... 21 0 2 0.50 1 0 1 0 0 0
...............................................................CTACAAAGGCGAGCACTTTCT..................................................................................................... 21 1 2 0.50 1 0 1 0 0 0
...............................................................CTACAAAGGCAAGCACTT........................................................................................................ 18 0 2 0.50 1 0 0 0 1 0
....................................................................................................GAAGGTGCTTCCCTTTGCAGTGT.............................................................. 23 0 2 0.50 1 0 1 0 0 0
...............................................................CTAGAAAGGCAAGCACTTTCT..................................................................................................... 21 1 3 0.33 1 1 0 0 0 0
...............................................................CTACAAAGGCAAGCACTTTCAT.................................................................................................... 22 2 4 0.25 1 1 0 0 0 0
....................................................................................................GAAGGTGCTTCCCTTTGCAGTTA.............................................................. 23 2 4 0.25 1 1 0 0 0 0
...............................................................CTACCAAGGCAAGCCCTTTCT..................................................................................................... 21 2 7 0.14 1 0 0 1 0 0

Anti-sense strand reads

CCAATTCCTTTTAAAGGTGTTCTTTACGTCTCATGACCTCGTTCTTCTAAAGTACGACACTGGGATGTTTCCGTTCGTGAAAGAGAACAGATTTTCTTTTCTTCCACGAAGGGAAACGTCACAATGCCAAACTCTTTTCGTTGCAACTTCAGTTACGACTAGAACCATTATGTAAACGTCGAGTA

************************************************(((((.((((((((.((.((((((.((((((((((((((......))))...)))))))))).)))))).)).)))))))).)))))..************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:18 PM