ID:

mml-mir-523b

 Coordinate:

chr19:59566410-59566498 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.3 -38.9

Sense Strand Reads

CCAGTGAAGGAAGATTCCAACAAAAAACCCAGAGTGCTGGAGCAAGAAGATCTCATGATGTGACCCTCTAGAGCGAAGCGCTTTCTGTTGGCTAGAAAAGAATAGGAAGCGCTTCCCTTTAGAGTGTTACGCTTTGAGAAAAGCAACGCGGATCTTGGTAATACACTTGCAGAGCGTGCTTATAATCAA

**************************************************........((((((.((((((((.(((((((((((((((...........))))))))))))))).)))))))).)))))).....***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116840

epididymis		 SRR116839

testes		 SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116843

cortex		 SRR116844

epididymis
.................................................................CTCTAGAGCGAAGCGCTTTCT....................................................................................................... 21 0 1 27.00 27 24 1 2 0 0 0
.................................................................CTCTAGAGCGAAGCGCTTTCTGT..................................................................................................... 23 0 1 14.00 14 7 6 0 0 1 0
.................................................................CTCTAGAGCGAAGCGCTTTCTG...................................................................................................... 22 0 1 6.00 6 3 3 0 0 0 0
........................................................................................................GGAAGCGCTTCTCTTTAGAGT................................................................ 21 1 1 5.00 5 3 1 0 1 0 0
.................................................................CTCTAGAGCGAAGCGCTTTCTT...................................................................................................... 22 1 1 3.00 3 0 2 0 1 0 0
.................................................................CTCTAGAGCGAAGCGCTTTC........................................................................................................ 20 0 1 3.00 3 3 0 0 0 0 0
.................................................................CTCTAGAGCGAAGCGCTTTCTTT..................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
...............................................................CCCTCTAGAGCGAAGCGCTT.......................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................GGAAGCGCTTCCCTTTAGAA................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
.................................................................CTCTAGAGCGTAGCGCTTTCTGT..................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.................................................................CTCTAGAGCGAAGCGCTTTCTGTT.................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................GGAAGCGCTTCTCTTTAGAGTAA.............................................................. 23 3 3 1.00 3 3 0 0 0 0 0
........................................................................................................GGAAGCGCTTCTCTTTAGAGTGTA............................................................. 24 2 1 1.00 1 0 1 0 0 0 0
........................................................................................................GGAAGCGCTTCTCTTTAGAGTG............................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................CTCTAGAGCGAAGCGCTTTA........................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0
.................................................................CTCTAGAGCGACGCGCTTTCT....................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................GGAAGCGCTTCCCTTTAGAGTGA.............................................................. 23 1 1 1.00 1 0 1 0 0 0 0
.................................................................CTCTAGAGCGAAGCGCTTTCTGTA.................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................GGAAGCGCTTCTCTTTAGAG................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
.................................................................TTCTAGAGCGAAGCGCTTTCTGT..................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0
.................................................................TTCTAGAGCGAAGCGCTTTCT....................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
........................................................................................................GGAAGCGCTTCCCTTTA.................................................................... 17 0 1 1.00 1 1 0 0 0 0 0
........................................................................................................GGAAGCGCTTCTCTTTAGATTG............................................................... 22 2 1 1.00 1 1 0 0 0 0 0
........................................................................................................GGAAGCGCTTCTCTTTAGAGTA............................................................... 22 2 2 0.50 1 0 0 1 0 0 0
.........................................................................................................GAAGCGCTTCTCTTTAGAGTGA.............................................................. 22 2 2 0.50 1 1 0 0 0 0 0
........................................................................................................TGAAGCGCTTCTCTTTAGAGT................................................................ 21 2 6 0.17 1 0 1 0 0 0 0
........................................................................................................GGAAGCGCTTCTCTTTAGAGTAG.............................................................. 23 3 6 0.17 1 1 0 0 0 0 0
..........................................................................................................................................AAAACCAACGCGGATC................................... 16 1 9 0.11 1 0 0 0 0 0 1
........................................................................................................................................AAAAAACCAACGCGGATC................................... 18 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GGTCACTTCCTTCTAAGGTTGTTTTTTGGGTCTCACGACCTCGTTCTTCTAGAGTACTACACTGGGAGATCTCGCTTCGCGAAAGACAACCGATCTTTTCTTATCCTTCGCGAAGGGAAATCTCACAATGCGAAACTCTTTTCGTTGCGCCTAGAACCATTATGTGAACGTCTCGCACGAATATTAGTT

*****************************************************........((((((.((((((((.(((((((((((((((...........))))))))))))))).)))))))).)))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116840

epididymis		 SRR116839

testes
........................................................................................................CCTTCGCGAAGGGAAATCTC................................................................. 20 0 1 1.00 1 1 0
......................................................................................................AGCTTTCGCGAAGGGAAATCTC................................................................. 22 2 2 0.50 1 0 1

Generated: 09/01/2015 at 12:17 PM