ID:

mml-mir-520a

 Coordinate:

chr19:59518714-59518798 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-47.7

Sense Strand Reads

TGGTCAAGGAAAATTCCAACAAGAAACCCAGGGTGCTGGAGCCAGAAGATCTCAGGCTGTGACCCTCCAGAGGGAAGTATTTTCTGTTGTCTGAAGGAAAAGAAAGTGCTTCCCTTTGGACTGTTTCGGTTTGAGAAAAGCAACATTGCAGTTGATGCTGATCTTGCAGAGCATGCTTATCATCA

*************************************************((((((((((.(((..((((((((((((((((((((....(((...)))..))))))))))))))))))))..))).))))))))))...********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116839

testes		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116843

cortex
......................................................................................................AAAGTGCTTCCCTTTGGACTGT............................................................. 22 0 1 112.00 112 71 31 7 3 0
......................................................................................................AAAGTGCTTCCCTTTGGACTG.............................................................. 21 0 1 59.00 59 34 20 2 2 1
................................................................CTCCAGAGGGAAGTATTTTCT.................................................................................................... 21 0 1 21.00 21 11 9 1 0 0
......................................................................................................AAAGTGCTTCCCTTTGGACT............................................................... 20 0 1 19.00 19 4 14 0 1 0
......................................................................................................AAAGTGCTTCCCTTTGGACTGA............................................................. 22 1 1 11.00 11 8 3 0 0 0
......................................................................................................AAAGTGCTTCCCTTTTGACTGT............................................................. 22 1 1 6.00 6 6 0 0 0 0
................................................................CTCCAGAGGGAAGTATTTT...................................................................................................... 19 0 1 5.00 5 0 5 0 0 0
................................................................CTCCAGAGGGAAGTATTTTC..................................................................................................... 20 0 1 3.00 3 1 1 0 1 0
......................................................................................................AAAGTGCTTCCCTTTGGACTAT............................................................. 22 1 1 2.00 2 1 1 0 0 0
......................................................................................................AAAGTGCTTCCCTTTGTACTGT............................................................. 22 1 1 2.00 2 1 1 0 0 0
......................................................................................................AAAGTGCTTCCCTTTGGACTT.............................................................. 21 1 1 2.00 2 2 0 0 0 0
......................................................................................................AAAGTGCTTCCCTTTGGACTGTT............................................................ 23 0 1 2.00 2 1 1 0 0 0
......................................................................................................AAAGTGCTTCGCTTTGGACTG.............................................................. 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................AAAGTGCTTCCCTTTGGAC................................................................ 19 0 1 1.00 1 0 1 0 0 0
......................................................................................................AAAGTTCTTCCCTTTGGACTGT............................................................. 22 1 1 1.00 1 1 0 0 0 0
......................................................................................................AAAGTGCTTCCCTTTGTACTG.............................................................. 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................AAAGTGCTTCTCTTTGGACTGT............................................................. 22 1 1 1.00 1 0 1 0 0 0
......................................................................................................AAAGTGCTTCCCTTTGGACTGTAT........................................................... 24 1 1 1.00 1 1 0 0 0 0
......................................................................................................AAAGAGCTTCCCTTTGGACTGT............................................................. 22 1 1 1.00 1 1 0 0 0 0
......................................................................................................AAAGTGCTTCCCTTTGGGCTGT............................................................. 22 1 1 1.00 1 1 0 0 0 0
......................................................................................................AAAGTGCTTCCCTTTTGACTGA............................................................. 22 2 1 1.00 1 1 0 0 0 0
......................................................................................................AAAGTGCTTCCCTTTGGACTAA............................................................. 22 2 3 1.00 3 1 2 0 0 0
......................................................................................................AACGTGCTTCCCTTTGGACTGT............................................................. 22 1 1 1.00 1 0 0 1 0 0
......................................................................................................AAAGTGCTTCCCTTTGGACTGAA............................................................ 23 2 1 1.00 1 1 0 0 0 0
................................................................CTCCAGAGGGAAGTATTTTCTGT.................................................................................................. 23 0 1 1.00 1 1 0 0 0 0
......................................................................................................AAAGTGCTTCCCTTTGGACTAAT............................................................ 23 2 2 0.50 1 1 0 0 0 0
......................................................................................................AAAGTGCTTCCCTTTGTACT............................................................... 20 1 2 0.50 1 0 1 0 0 0
......................................................................................................AAAGTGCTTCCCTTTGGACA............................................................... 20 1 2 0.50 1 0 1 0 0 0
................................................................CTCCAGAGGGAAGTATTTTTTT................................................................................................... 22 2 2 0.50 1 0 1 0 0 0
......................................................................................................AAAGTGCTTCCCTTTGG.................................................................. 17 0 2 0.50 1 0 1 0 0 0
................................................................CTCCAGAGGGAAGTATTTTCA.................................................................................................... 21 1 2 0.50 1 0 1 0 0 0
......................................................................................................AAAGTGCTTCCCTTTGGCCTGA............................................................. 22 2 3 0.33 1 1 0 0 0 0
...........................................AGAAGATCTCAGGCTGTGAC.......................................................................................................................... 20 0 11 0.09 1 1 0 0 0 0
......................................................................................................AAAGTGCTTCCCTTTGTACA............................................................... 20 2 16 0.06 1 0 1 0 0 0

Anti-sense strand reads

ACCAGTTCCTTTTAAGGTTGTTCTTTGGGTCCCACGACCTCGGTCTTCTAGAGTCCGACACTGGGAGGTCTCCCTTCATAAAAGACAACAGACTTCCTTTTCTTTCACGAAGGGAAACCTGACAAAGCCAAACTCTTTTCGTTGTAACGTCAACTACGACTAGAACGTCTCGTACGAATAGTAGT

**********************************************((((((((((.(((..((((((((((((((((((((....(((...)))..))))))))))))))))))))..))).))))))))))...************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR116844

epididymis
.....................................................................................................CTATCACGAAGGGAAAGCTG................................................................ 20 2 3 0.33 1 1

Generated: 09/01/2015 at 12:16 PM