ID:

mml-mir-519b

 Coordinate:

chr19:59589147-59589227 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.6
mature

  1. mml-mir-518c  chr19:59543029-59543051 +
  2. mml-mir-519b  chr19:59589159-59589181 +
star

Sense Strand Reads

GTCAAGGAAGATTCCAACAAAATATCCACGGTGCTGGAGCAAGAAGATCCCATGCTGTGACCCTCTGGAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAAGAACGTGCATCCCTTTAGAGGGTTACTCTTTGAGAAGAGCAACGTTTAATTTGATGTTGATCTGGGTAATACGTTTGCAGAA

***********************************************((.((....(((((((((((((((((.((((.((((....(((...)))..)))).)))).)))))))))))))))))....)).))....******************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR116839

testes		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116845

epididymis
..............................................................CTCTGGAGGGAAGCGCTTTCTGT................................................................................................ 23 0 2 4.50 9 3 3 3 0
..............................................................CTCTGGAGGGAAGCGCTTTCTGTT............................................................................................... 24 0 2 4.00 8 7 1 0 0
..............................................................CTCTGGAGGGAAGCGCTTTCT.................................................................................................. 21 0 2 2.00 4 2 2 0 0
....................................................................................................AACGTGCATCCCTTTAGAGGGTT.......................................................... 23 0 1 1.00 1 1 0 0 0
..............................................................CTCTGGAGGGAAGCGCTTTTTTTT............................................................................................... 24 2 2 1.00 2 2 0 0 0
..............................................................CTCTGGAGGGAAGCGCTTTCTG................................................................................................. 22 0 2 0.50 1 0 1 0 0
..............................................................CTCTGGAGGGAAGCGCTTTCTAT................................................................................................ 23 1 2 0.50 1 1 0 0 0
...............................................................TCTGGAGGGAAGCGCTTTCTGT................................................................................................ 22 0 2 0.50 1 0 1 0 0
..............................................................CTCTGGAGGGAAGCGCTTTCA.................................................................................................. 21 1 2 0.50 1 0 0 1 0
..............................................................CTCTGGAGTGAAGCGCTTTCTGT................................................................................................ 23 1 2 0.50 1 1 0 0 0
..............................................................CTCTGGAGGGAAGCGCTTT.................................................................................................... 19 0 2 0.50 1 0 0 1 0
..............................................................CTCTGGAGGGAAGCGCTTTCTGTTT.............................................................................................. 25 1 2 0.50 1 1 0 0 0
..............................................................CTCTGGAGGGAAGCGCTTTCTGTTATC............................................................................................ 27 1 2 0.50 1 0 0 0 1
..............................................................CTCTGGAGGGAAGCGCTTTT................................................................................................... 20 1 2 0.50 1 0 1 0 0
..............................................................CTCTGGAGGGAAGCGCTTTC................................................................................................... 20 0 2 0.50 1 0 1 0 0
..............................................................CTCTGGAGGGAAGCGCTTTCTTT................................................................................................ 23 1 3 0.33 1 1 0 0 0
..............................................................CTCTGGAGGGAAGCGCTTAA................................................................................................... 20 2 5 0.20 1 0 1 0 0
.............................................................CCTCTCGAGGGAAGCGCTTTCT.................................................................................................. 22 1 5 0.20 1 1 0 0 0

Anti-sense strand reads

CAGTTCCTTCTAAGGTTGTTTTATAGGTGCCACGACCTCGTTCTTCTAGGGTACGACACTGGGAGACCTCCCTTCGCGAAAGACAACAGACTTTCTTTTCTTGCACGTAGGGAAATCTCCCAATGAGAAACTCTTCTCGTTGCAAATTAAACTACAACTAGACCCATTATGCAAACGTCTT

*******************************************((.((....(((((((((((((((((.((((.((((....(((...)))..)))).)))).)))))))))))))))))....)).))....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116844

epididymis
.........CTATGTTTGTTTTATAGGTGC....................................................................................................................................................... 21 2 6 0.17 1 1

Generated: 09/01/2015 at 12:18 PM