ID:

mml-mir-518f

 Coordinate:

chr19:59528995-59529081 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

CCAGTGAAGGAAAATTCCAACAAAAAATCCAGAGTGCTGGAGCAAGAAGATCTCAGGCTGTGACCCTCTAGAGGGAAGCACTTTATCTTGTGTGAAAGGAAAGAAAGCGCTTCCCTTCAGAGGATTACTCTTTGAGAAAAGCAACGTTGAAGTTGATGCTGATCTTGGTAATAGATTTGCAGAGAAT

**************************************************(((((((..((((.(((((.(((((((((.((((.((((.......))))...)))).))))))))).))))).))))..)))))))..************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR116840

epididymis		 SRR116839

testes		 SRR116841

prostate		 SRR116842

seminal vesicle
......................................................................................................GAAAGCGCTTCCCTTCAGAGGA............................................................... 22 0 1 10.00 10 2 7 1 0
.................................................................CTCTAGAGGGAAGCACTTTAT..................................................................................................... 21 0 1 4.00 4 3 1 0 0
......................................................................................................GAAAGCGCTTCCCTTCAGAGGAT.............................................................. 23 0 1 2.00 2 2 0 0 0
..................................................................TCTAGAGGGAAGCACTTTAT..................................................................................................... 20 0 1 2.00 2 2 0 0 0
......................................................................................................GAAAGCGCTTCCCTTCAGAGGTTT............................................................. 24 1 1 1.00 1 1 0 0 0
.................................................................CTCTAGAGGGAAGCACTTTATCT................................................................................................... 23 0 1 1.00 1 0 1 0 0
......................................................................................................GAAAGCGCTTCCCTTCAGAGGATA............................................................. 24 1 1 1.00 1 0 1 0 0
......................................................................................................GAAAGCGCTTCCCTTCAGAGGAA.............................................................. 23 1 1 1.00 1 0 1 0 0
......................................................................................................GAAAGCGCTTCCCTTCCGAGGA............................................................... 22 1 1 1.00 1 1 0 0 0
.................................................................CTCTAGAGGGAAGCACTTTATC.................................................................................................... 22 0 1 1.00 1 0 1 0 0
......................................................................................................GAAAGAGCTTCCCTTCAGAGGA............................................................... 22 1 2 0.50 1 0 1 0 0
................................................................CCTCTAGAAGGAAGCACTTTA...................................................................................................... 21 1 2 0.50 1 1 0 0 0
...............................................................CCCTCTAGAAGGAAGCACTTTAA..................................................................................................... 23 2 2 0.50 1 1 0 0 0
.................................................................CTCTAGAGGGAAGCACTTTT...................................................................................................... 20 1 2 0.50 1 1 0 0 0
......................................................................................................GAAAGCGCTTCCCTTCAGT.................................................................. 19 1 3 0.33 1 0 0 0 1
.................................................................GTCTAGAGGGAAGCACTTTAA..................................................................................................... 21 2 4 0.25 1 1 0 0 0
............................................AGAAGATCTCAGGCTGTGAC........................................................................................................................... 20 0 11 0.09 1 0 1 0 0

Anti-sense strand reads

GGTCACTTCCTTTTAAGGTTGTTTTTTAGGTCTCACGACCTCGTTCTTCTAGAGTCCGACACTGGGAGATCTCCCTTCGTGAAATAGAACACACTTTCCTTTCTTTCGCGAAGGGAAGTCTCCTAATGAGAAACTCTTTTCGTTGCAACTTCAACTACGACTAGAACCATTATCTAAACGTCTCTTA

************************************************(((((((..((((.(((((.(((((((((.((((.((((.......))))...)))).))))))))).))))).))))..)))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116839

testes		 SRR116840

epididymis
...................................................................................................TTTCTTTCGCGAAGGGAGGTCTC................................................................. 23 1 3 0.33 1 1 0
...................................................................................................TTTCTTTCGCGAAGGGAAATCTC................................................................. 23 1 4 0.25 1 0 1

Generated: 09/01/2015 at 12:16 PM