ID:

mml-mir-518c

 Coordinate:

chr19:59543005-59543105 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-52.3 -52.2 -52.2
mature

  1. mml-mir-518c  chr19:59543029-59543051 +
  2. mml-mir-519b  chr19:59589159-59589181 +
star

Sense Strand Reads

CATCTTAACCTGGTCAAGGAAAATTTCAACAAAAATCCCTGAGTGCTGGAGCGAGAAGATTTCATGCTGTGACTCTCTGGAGGGAAGCGCTTTCTGTTGTCTGAAAGAAAACAAAGCGCTTCTCTTTAGAGAGTTACGGTTTGAGAAAAGCAACGTTGAAGTTGATGCTGATCTTGGTAATGCATTCGCAGAGCATGCTTA

***********************************************************(((((.(((((((((((((((((((((((((((..((((.(((...))).))))))))))))))))))))))))))))))).))))).****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116840

epididymis		 SRR116839

testes		 SRR116842

seminal vesicle		 SRR116845

epididymis
..........................................................................CTCTGGAGGGAAGCGCTTTCTGT........................................................................................................ 23 0 2 4.50 9 3 3 3 0
...............................................................................................................CAAAGCGCTTCTCTTTAGAGA..................................................................... 21 0 1 4.00 4 3 1 0 0
..........................................................................CTCTGGAGGGAAGCGCTTTCTGTT....................................................................................................... 24 0 2 4.00 8 1 7 0 0
...............................................................................................................CAAAGCGCTTCTCTTTAGAGAGT................................................................... 23 0 1 3.00 3 1 2 0 0
..........................................................................CTCTGGAGGGAAGCGCTTTCT.......................................................................................................... 21 0 2 2.00 4 2 2 0 0
...............................................................................................................CAAAGCGCTTCTCTTTAGAGAT.................................................................... 22 1 1 2.00 2 1 1 0 0
...............................................................................................................CAAAGCGCTTCTCTTTAGAG...................................................................... 20 0 1 2.00 2 2 0 0 0
...............................................................................................................CAAAGCGCTTCTCTTTAGAGAA.................................................................... 22 1 2 1.00 2 2 0 0 0
...............................................................................................................CAAAGCGCTTCTCTTTAGAGAGAA.................................................................. 24 2 1 1.00 1 1 0 0 0
....................................................GAGAAGATTTCATGCTGTGACT............................................................................................................................... 22 0 1 1.00 1 0 1 0 0
...............................................................................................................CAAAGCGCTTCTCTTTATAGA..................................................................... 21 1 1 1.00 1 1 0 0 0
...............................................................................................................CAAAGCGCTTCTCTTTAGATAG.................................................................... 22 1 1 1.00 1 1 0 0 0
...............................................................................................................CAAAGCGCTTCTCTTTAGAGAG.................................................................... 22 0 1 1.00 1 1 0 0 0
.....................................................AGAAGATTTCATGCTGTGACT............................................................................................................................... 21 0 1 1.00 1 1 0 0 0
..........................................................................CTCTGGAGGGAAGCGCTTTTTTTT....................................................................................................... 24 2 2 1.00 2 0 2 0 0
...............................................................................................................CAAAGCGCTTCTCTTTAGAGAGA................................................................... 23 1 1 1.00 1 0 1 0 0
..........................................................................CTCTGGAGGGAAGCGCTTTCTGTTATC.................................................................................................... 27 1 2 0.50 1 0 0 0 1
..........................................................................CTCTGGAGGGAAGCGCTTTC........................................................................................................... 20 0 2 0.50 1 1 0 0 0
..........................................................................CTCTGGAGGGAAGCGCTTTCTAT........................................................................................................ 23 1 2 0.50 1 0 1 0 0
..........................................................................CTCTGGAGGGAAGCGCTTTCA.......................................................................................................... 21 1 2 0.50 1 0 0 1 0
..........................................................................CTCTGGAGGGAAGCGCTTTCTG......................................................................................................... 22 0 2 0.50 1 1 0 0 0
..........................................................................CTCTGGAGTGAAGCGCTTTCTGT........................................................................................................ 23 1 2 0.50 1 0 1 0 0
..........................................................................CTCTGGAGGGAAGCGCTTT............................................................................................................ 19 0 2 0.50 1 0 0 1 0
..........................................................................CTCTGGAGGGAAGCGCTTTCTGTTT...................................................................................................... 25 1 2 0.50 1 0 1 0 0
..........................................................................CTCTGGAGGGAAGCGCTTTT........................................................................................................... 20 1 2 0.50 1 1 0 0 0
...........................................................................TCTGGAGGGAAGCGCTTTCTGT........................................................................................................ 22 0 2 0.50 1 1 0 0 0
..........................................................................CTCTGGAGGGAAGCGCTTTCTTT........................................................................................................ 23 1 3 0.33 1 0 1 0 0
..........................................................................CTCTGGAGGGAAGCGCTTAA........................................................................................................... 20 2 5 0.20 1 1 0 0 0

Anti-sense strand reads

GTAGAATTGGACCAGTTCCTTTTAAAGTTGTTTTTAGGGACTCACGACCTCGCTCTTCTAAAGTACGACACTGAGAGACCTCCCTTCGCGAAAGACAACAGACTTTCTTTTGTTTCGCGAAGAGAAATCTCTCAATGCCAAACTCTTTTCGTTGCAACTTCAACTACGACTAGAACCATTACGTAAGCGTCTCGTACGAAT

******************************************************(((((.(((((((((((((((((((((((((((..((((.(((...))).))))))))))))))))))))))))))))))).))))).*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:17 PM