ID:

mml-mir-516b

 Coordinate:

chr19:59576693-59576782 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-44.7 -44.4 -44.4

Sense Strand Reads

GGTCAAAAAACATTCCAACAAAAAAATCCACCATGCACCGAGGAAGAAGATCTCAGGCTGTGACCATCTGGAGGTAAGAAGCACTTTCTGTTTTGTGAAAGAAAAGAAAGTGCTTCCTTTCAGAGGGTTACTCTTTGAGAAAAGCAACGTTGAAGGTTGAAATTGATGCTGATCTTGGTAATACATTTGG

***********************************...............(((((((..((((((.((((((((...((((((((((((.((((.....)))).)))))))))))))))))))).))))))..)))))))...............*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116840

epididymis		 SRR116839

testes		 SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116843

cortex
.................................................................ATCTGGAGGTAAGAAGCACTTT....................................................................................................... 22 0 1 537.00 537 377 120 23 15 2
.................................................................ATCTGGAGGTAAGAAGCACTT........................................................................................................ 21 0 1 93.00 93 76 11 6 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTTT...................................................................................................... 23 1 1 44.00 44 23 18 1 1 1
.................................................................ATCTGGAGGTAAGAAGCACT......................................................................................................... 20 0 1 31.00 31 24 5 2 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTTA...................................................................................................... 23 1 1 28.00 28 18 8 1 0 1
.................................................................ATCTGGAGGTAAGAAGCACTTTCT..................................................................................................... 24 0 1 14.00 14 1 11 0 0 2
.................................................................ATCTGGAGGTAAGAAGCACTTTAT..................................................................................................... 24 1 1 11.00 11 5 6 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTTAA..................................................................................................... 24 2 1 11.00 11 3 6 1 1 0
.................................................................ATCTGGAGGTAAGAAGCACTTA....................................................................................................... 22 1 1 11.00 11 10 1 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTTTT..................................................................................................... 24 1 1 10.00 10 7 3 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTTC...................................................................................................... 23 0 1 10.00 10 3 7 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTAA....................................................................................................... 22 2 1 7.00 7 5 1 1 0 0
.................................................................ATCTGGAGGTAAGAAGCA........................................................................................................... 18 0 1 5.00 5 4 0 1 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTAT...................................................................................................... 23 2 1 4.00 4 2 2 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTA........................................................................................................ 21 1 1 3.00 3 3 0 0 0 0
.................................................................ATCTGGGGGTAAGAAGCACTTT....................................................................................................... 22 1 1 3.00 3 1 1 1 0 0
.................................................................ATCTGGATGTAAGAAGCACTTT....................................................................................................... 22 1 1 3.00 3 2 1 0 0 0
.................................................................ATCTGGAGGTAAGAAGCAATTT....................................................................................................... 22 1 1 3.00 3 3 0 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTAA...................................................................................................... 23 2 2 3.00 6 5 0 0 1 0
.................................................................ATCTGGAGGTCAGAAGCACTTT....................................................................................................... 22 1 1 3.00 3 1 1 0 1 0
.................................................................ATCTGGAGGTAAGAAGCACTTTCTGTT.................................................................................................. 27 0 1 2.00 2 0 2 0 0 0
.................................................................ATCTGGAGGTAAGAAGCAC.......................................................................................................... 19 0 1 2.00 2 2 0 0 0 0
.................................................................ATCTGGTGGTAAGAAGCACTTT....................................................................................................... 22 1 1 2.00 2 1 1 0 0 0
.................................................................ATCTGGAGTTAAGAAGCACTTT....................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
.................................................................ATCTGGAGGTAAGAAGAACTTT....................................................................................................... 22 1 1 2.00 2 2 0 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTTCTGT................................................................................................... 26 0 1 2.00 2 0 2 0 0 0
.................................................................ATCTGGCGGTAAGAAGCACTTT....................................................................................................... 22 1 1 2.00 2 1 1 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTTTG..................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTTATGT................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
.................................................................ATCTGTAGGTAAGAAGCACTTTCT..................................................................................................... 24 1 1 1.00 1 0 1 0 0 0
.................................................................ATCTGGAGGTAAGCAGCACTTT....................................................................................................... 22 1 1 1.00 1 0 0 1 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTTGT..................................................................................................... 24 1 1 1.00 1 0 0 0 1 0
....................................................................TGGAGGTAAGAAGCACTTT....................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
.................................................................ATCTGCAGGTAAGAAGCACTTTCT..................................................................................................... 24 1 1 1.00 1 0 1 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTTCA..................................................................................................... 24 1 1 1.00 1 0 1 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTAG....................................................................................................... 22 2 1 1.00 1 1 0 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTGA...................................................................................................... 23 2 1 1.00 1 1 0 0 0 0
.................................................................ATCTGGAGGTAAGAACCACTTT....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.................................................................ATCAGGAGGTAAGAAGCACTTTC...................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
.................................................................ATCTGGAGGTAAGAAGCAA.......................................................................................................... 19 1 1 1.00 1 1 0 0 0 0
.................................................................ATCTGGAGGTATGAAGCACTTT....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.................................................................ATCTGGAGGTCAGAAGCACTTTC...................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTTCAA.................................................................................................... 25 2 1 1.00 1 1 0 0 0 0
.................................................................ATCAGGAGGTAAGAAGCACTTT....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.................................................................ATCTGGAGGTAAGAAGCCCTTT....................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.................................................................ATCTAGAGGTAAGAAGCACTTTA...................................................................................................... 23 2 1 1.00 1 0 0 0 0 1
.................................................................ATCTGGAGGTAAGAAGCACA......................................................................................................... 20 1 1 1.00 1 1 0 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTTG...................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
.................................................................ATCTGGAGGTAAGAATCACTTT....................................................................................................... 22 1 1 1.00 1 0 0 0 1 0
.................................................................ATCTGGAGGTAAGAAGCACTTTCTA.................................................................................................... 25 1 1 1.00 1 0 1 0 0 0
.................................................................ATCTGGAGGTGAGAAGCACTTT....................................................................................................... 22 1 1 1.00 1 0 1 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTTTTT.................................................................................................... 25 2 1 1.00 1 0 1 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTTCTAT................................................................................................... 26 1 1 1.00 1 0 1 0 0 0
.................................................................ATCTGGAGGTACGAAGCACTTTT...................................................................................................... 23 2 1 1.00 1 1 0 0 0 0
.................................................................ATCCGGAGGTAAGAAGCACTTT....................................................................................................... 22 1 1 1.00 1 0 1 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTTCGT.................................................................................................... 25 2 1 1.00 1 0 1 0 0 0
.................................................................ATCTTGAGGTAAGAAGCACTT........................................................................................................ 21 1 1 1.00 1 1 0 0 0 0
.................................................................ATCTGGAGGTAAGAAGCACTTTCTG.................................................................................................... 25 0 1 1.00 1 0 1 0 0 0
.................................................................ATCTGGAGGTTAGAAGCACTTTT...................................................................................................... 23 2 1 1.00 1 0 1 0 0 0
.................................................................ATCTGTAGGTAAGAAGCACTTT....................................................................................................... 22 1 1 1.00 1 0 1 0 0 0
.................................................................ATCTGGAGGTAAGAAGCAAT......................................................................................................... 20 1 1 1.00 1 0 0 1 0 0
.................................................................ATCTGCAGGTAAGAAGCACTTTC...................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
.................................................................ATCTGGAGGTAATAAGCACTTTT...................................................................................................... 23 2 2 0.50 1 1 0 0 0 0
.................................................................ATCTGGAGGTAATAAGCACTTTTT..................................................................................................... 24 2 2 0.50 1 0 1 0 0 0
.................................................................ATCTGGAGGTAAGAATAACTTT....................................................................................................... 22 2 3 0.33 1 1 0 0 0 0
............................................AGAAGATCTCAGGCTGTGAC.............................................................................................................................. 20 0 11 0.09 1 0 1 0 0 0
.................................................................ATCTGGAGGTAAGAAGCAAG......................................................................................................... 20 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

CCAGTTTTTTGTAAGGTTGTTTTTTTAGGTGGTACGTGGCTCCTTCTTCTAGAGTCCGACACTGGTAGACCTCCATTCTTCGTGAAAGACAAAACACTTTCTTTTCTTTCACGAAGGAAAGTCTCCCAATGAGAAACTCTTTTCGTTGCAACTTCCAACTTTAACTACGACTAGAACCATTATGTAAACC

***********************************...............(((((((..((((((.((((((((...((((((((((((.((((.....)))).)))))))))))))))))))).))))))..)))))))...............*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:17 PM