ID:

mml-mir-514a

 Coordinate:

chrX:146523184-146523275 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.4 -29.2 -29.2

Sense Strand Reads

GTTTCAAAAGTACACAAATGGGTGCTTAGGGAGGGCTTCCATCCTTCAACATGTTGTCTGTGGTACCCTACTCTGGAGAGTGACAATCATGTATAATTAAATTTGATTGACACTTCTGTGAGTAGAGTAATGCATGACACGTGCGACAGACAATGGCACTGTGGATGCATTGAAGGTGTTTTATTGCACACA

*****************************************************.((((((((.(((.((((((((((.((((.((((((.((........)).)))))).)))))))).)))))).))).)))).))))..*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116839

testes		 SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116840

epididymis		 SRR116843

cortex
.........................................................................................................ATTGACACTTCTGTGAGTAGA.................................................................. 21 0 1 95.00 95 79 7 6 2 1
.......................................................................................................TGATTGACACTTCTGTGAGTAGA.................................................................. 23 0 1 24.00 24 20 0 2 1 1
.........................................................................................................ATTGACACTTCTGTGAGTAG................................................................... 20 0 1 20.00 20 17 2 1 0 0
....................................................................TACTCTGGAGAGTGACAATCATG..................................................................................................... 23 0 1 5.00 5 4 1 0 0 0
.........................................................................................................ATTGACACTTCTGTGAGTAGT.................................................................. 21 1 1 4.00 4 1 3 0 0 0
.........................................................................................................ATTGACACTTCTGTGAGTAGAA................................................................. 22 1 1 4.00 4 3 0 0 1 0
....................................................................TACTCTGGAGAGTGACAATCA....................................................................................................... 21 0 1 3.00 3 2 0 0 1 0
....................................................................TACTCTGGAGAGTGACAATCAT...................................................................................................... 22 0 1 3.00 3 3 0 0 0 0
.........................................................................................................ATTGACACTTCTGTGAGTATA.................................................................. 21 1 2 2.50 5 5 0 0 0 0
.......................................................................................................TGATTGACACTTCTGTGAGTAG................................................................... 22 0 1 2.00 2 2 0 0 0 0
.........................................................................................................ATTGACACTTCTGTGAGTAA................................................................... 20 1 1 2.00 2 1 0 0 1 0
.........................................................................................................ATTGACACTTCTGTGATTAGA.................................................................. 21 1 1 2.00 2 2 0 0 0 0
.........................................................................................................ATTGACACTTCTGTGAGTA.................................................................... 19 0 1 2.00 2 2 0 0 0 0
....................................................................TACTCTGGAGAGTGGCAATCA....................................................................................................... 21 1 2 1.50 3 3 0 0 0 0
.........................................................................................................ATTGACACTTCTGTGAGTCGA.................................................................. 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................TTGATTGACACTTCTGTGAGT..................................................................... 21 0 1 1.00 1 1 0 0 0 0
.......................................................................TCTGGAGAGTGACAATCATG..................................................................................................... 20 0 1 1.00 1 0 0 0 1 0
.......................................................................................................TGATTCACACTTCTGTGAGTAGA.................................................................. 23 1 1 1.00 1 1 0 0 0 0
....................................................................TACTCTGGAGAGTGACAA.......................................................................................................... 18 0 1 1.00 1 1 0 0 0 0
.......................................................................................................TGATTGACACTTCTGTGAGTAGAA................................................................. 24 1 1 1.00 1 0 0 0 1 0
....................................................................TACTCAGGAGAGTGACAATCAT...................................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.........................................................................................................ATTGACACTTCTGTTAGTAGA.................................................................. 21 1 1 1.00 1 1 0 0 0 0
....................................................................TACTCTGGAGAGTGACAATCATGT.................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
....................................................................TACTCTGGAGAGTGACAATCATA..................................................................................................... 23 1 1 1.00 1 1 0 0 0 0
.......................................................................................................TGATTGACACTTCTGTGAGAAG................................................................... 22 1 1 1.00 1 1 0 0 0 0
.......................................................................................................TGATTGACACTTCTGTGAGTATA.................................................................. 23 1 2 1.00 2 2 0 0 0 0
......................................................................................................TTGATTGACACTTCTGTGAGTAGA.................................................................. 24 0 1 1.00 1 1 0 0 0 0
....................................................................TACTCTGGAGAGTGACAATC........................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
.........................................................................................................ATTGACACTTCTGTTAGTAG................................................................... 20 1 2 0.50 1 1 0 0 0 0
.........................................................................................................ATTGACACTTCTTTGAGTAGA.................................................................. 21 1 2 0.50 1 1 0 0 0 0
....................................................................TACTTTGGAGAGTGGCAATCA....................................................................................................... 21 2 6 0.17 1 1 0 0 0 0
....................................................................TACCCTGGAGAGTGACAATCAAA..................................................................................................... 23 3 10 0.10 1 1 0 0 0 0
.........................................................................................................ATTGATACTTCTGTGAGTAGAAA................................................................ 23 3 17 0.06 1 1 0 0 0 0

Anti-sense strand reads

CAAAGTTTTCATGTGTTTACCCACGAATCCCTCCCGAAGGTAGGAAGTTGTACAACAGACACCATGGGATGAGACCTCTCACTGTTAGTACATATTAATTTAAACTAACTGTGAAGACACTCATCTCATTACGTACTGTGCACGCTGTCTGTTACCGTGACACCTACGTAACTTCCACAAAATAACGTGTGT

***************************************************.((((((((.(((.((((((((((.((((.((((((.((........)).)))))).)))))))).)))))).))).)))).))))..***************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:37 PM