ID:

mml-mir-513b-1

 Coordinate:

chrX:146444843-146444923 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.3
mature

  1. mml-mir-513b-1  chrX:146444890-146444911 -
  2. mml-mir-513b-2  chrX:146466127-146466148 -
star

  1. mml-mir-513b-1  chrX:146444854-146444875 -
  2. mml-mir-513b-2  chrX:146466091-146466112 -

Sense Strand Reads

TGGCATGAATAGGGAGCATTGGGTCTGGGATGCCACATTCAGCCATTCGGTTTACAGTGCCTTTCACAAGGAGGTGTCATTTATGTGAACTAAACTATAAATGTCACCTTTTTGGGAAGAGTAATGTACAACATGCACTGCAAATGTGGTGTCCCTGGGGATGGGGCTGTAGCTGCGAGCA

***********************************************..(((((((.((((((((.((((((((((.(((((((((.......)).))))))).))))))))))))))).))).)))).)))...********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116839

testes		 SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116840

epididymis		 SRR116843

cortex
..............................................................TTCACAAGGAGGTGTCATTTAT................................................................................................. 22 0 2 25.00 50 41 2 4 2 1
..............................................................TTCACAAGGAGGTGTCATTT................................................................................................... 20 0 2 13.00 26 21 3 0 2 0
..............................................................TTCACAAGGAGGTGTCATTTA.................................................................................................. 21 0 2 9.00 18 15 2 1 0 0
..............................................................TTCACAAGGAGGTGTCATT.................................................................................................... 19 0 2 2.00 4 2 1 0 1 0
..............................................................TTCACAAGGAGGTGTCATTTATG................................................................................................ 23 0 2 1.00 2 2 0 0 0 0
..............................................................TTCACAAGGAGGTGTCATTTAA................................................................................................. 22 1 2 1.00 2 2 0 0 0 0
..............................................................TTCACAAGGAGGTGTCATTTATT................................................................................................ 23 1 2 1.00 2 1 0 1 0 0
..............................................................TTCACGAGGAGGTGTCATTTAT................................................................................................. 22 1 2 0.50 1 1 0 0 0 0
..............................................................TTCACCAGGAGGTGTCATTTAT................................................................................................. 22 1 2 0.50 1 1 0 0 0 0
..............................................................TTCACAAGGAGGGGTCATTTAT................................................................................................. 22 1 2 0.50 1 0 1 0 0 0
..............................................................TTCACAAGGAGTTGTCATTTAT................................................................................................. 22 1 2 0.50 1 1 0 0 0 0
..............................................................TTCACCAGGAGGTGTCATTTA.................................................................................................. 21 1 2 0.50 1 1 0 0 0 0
..............................................................TTCACAAGGAGGTGTCATTAA.................................................................................................. 21 1 2 0.50 1 1 0 0 0 0
..............................................................TTCGCAAGGAGGTGTCATTTAT................................................................................................. 22 1 2 0.50 1 1 0 0 0 0
..............................................................TTCACAAGGAGGTGTTATTTAT................................................................................................. 22 1 2 0.50 1 1 0 0 0 0
..................................................................................................AAATGTCACCTTTTTGGGAAGA............................................................. 22 0 2 0.50 1 1 0 0 0 0
..............................................................TTCACTAGGAGGTGTCATTTA.................................................................................................. 21 1 3 0.33 1 1 0 0 0 0

Anti-sense strand reads

ACCGTACTTATCCCTCGTAACCCAGACCCTACGGTGTAAGTCGGTAAGCCAAATGTCACGGAAAGTGTTCCTCCACAGTAAATACACTTGATTTGATATTTACAGTGGAAAAACCCTTCTCATTACATGTTGTACGTGACGTTTACACCACAGGGACCCCTACCCCGACATCGACGCTCGT

**********************************************..(((((((.((((((((.((((((((((.(((((((((.......)).))))))).))))))))))))))).))).)))).)))...*********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:37 PM