ID:

mml-mir-513a-3

 Coordinate:

chrX:146482873-146482954 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.3
mature

  1. mml-mir-513a-1  chrX:146464440-146464459 -
  2. mml-mir-513a-2  chrX:146474533-146474552 -
  3. mml-mir-513a-3  chrX:146482922-146482941 -
star

Sense Strand Reads

ATGGCATGAATAGGGAGCATTGGGTCTGGGATGCCACATTCACCCATTTACTGTACATTGCCTTTCACAGGGAGGTGTCATTTATGTGAACTAAACTATAAATGTCACTTTTCTGAGAAGAGTAATGTACAGCATGCACTGCAAAATGTGGTGTCCCTGGGGATGGGGCTGTAGCTGCGAGC

************************************************..(((((((((((.((((.((((((((((.(((((((((.......)).))))))).)))))))))).)))).)))))))))))....********************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116839

testes		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116843

cortex
...............................................................TTCACAGGGAGGTGTCATTT................................................................................................... 20 0 3 26.33 79 69 3 1 4 2
..............................................................TTTCACAGGGAGGTGTCATTT................................................................................................... 21 0 3 23.00 69 62 2 3 2 0
...............................................................TTCACAGGGAGGTGTCATTTAT................................................................................................. 22 0 3 22.33 67 57 4 2 2 2
...............................................................TTCACAGGGAGGTGTCATTTA.................................................................................................. 21 0 3 13.67 41 37 2 2 0 0
...............................................................TTCACAGGGAGGTGTCATT.................................................................................................... 19 0 3 6.67 20 20 0 0 0 0
..............................................................TTTCACAGGGAGGTGTCATTTA.................................................................................................. 22 0 3 6.33 19 14 3 2 0 0
..............................................................TTTCACAGGGAGGTGTCATT.................................................................................................... 20 0 3 4.33 13 10 2 1 0 0
...................................................................................................AAATGTCACTTTTCTGAGAAGA............................................................. 22 0 1 4.00 4 3 0 1 0 0
..................................................................................................TAAATGTCACTTTTCTGAGAAGA............................................................. 23 0 1 2.00 2 2 0 0 0 0
..............................................................TTTCACAGGGAGGTGTCATTA................................................................................................... 21 1 3 1.33 4 4 0 0 0 0
...............................................................TTCACAGGGAGGTGTCATTA................................................................................................... 20 1 4 1.00 4 4 0 0 0 0
...............................................................TTCGCAGGGAGGTGTCATTTAT................................................................................................. 22 1 3 1.00 3 3 0 0 0 0
....................................................................................................AATGTCACTTTTCTGAGAAGAG............................................................ 22 0 1 1.00 1 1 0 0 0 0
...............................................................TTCACCGGGAGGTGTCATTTAT................................................................................................. 22 1 3 1.00 3 3 0 0 0 0
....................................................................................................AATGTCACTTTTCTGAGAAG.............................................................. 20 0 1 1.00 1 1 0 0 0 0
...............................................................TTCACAGGGAGGTGTCATTTATGT............................................................................................... 24 0 3 1.00 3 3 0 0 0 0
..................................................................................................TAAATGTCACGTTTCTGAGAAGA............................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................TTCACAGGGAGGTGTCATTTT.................................................................................................. 21 1 3 1.00 3 3 0 0 0 0
..................................................................................................TAAATGTCACTTTTCTGATAAG.............................................................. 22 1 1 1.00 1 1 0 0 0 0
...............................................................TTCACAGGGAGGTGTCAT..................................................................................................... 18 0 4 0.75 3 2 0 0 1 0
..............................................................TTTCACAGGGAGGTGTCATTAA.................................................................................................. 22 1 3 0.67 2 2 0 0 0 0
...............................................................TTCACCGGGAGGTGTCATTTA.................................................................................................. 21 1 3 0.67 2 2 0 0 0 0
...............................................................TTCACTGGGAGGTGTCATTT................................................................................................... 20 1 3 0.67 2 2 0 0 0 0
..............................................................TTTCACAGGGAGGTGTCATTTAT................................................................................................. 23 0 3 0.67 2 2 0 0 0 0
..............................................................TTTCACAGGGAGGTGTCAT..................................................................................................... 19 0 4 0.50 2 2 0 0 0 0
....................................................................................................AATGTCACTTTTCTTAGAAGA............................................................. 21 1 2 0.50 1 0 0 0 1 0
..............................................................TTTCACAGGGCGGTGTCATTT................................................................................................... 21 1 3 0.33 1 1 0 0 0 0
..............................................................TTTCACAGGGAGGTGTCATTTGT................................................................................................. 23 1 3 0.33 1 1 0 0 0 0
..............................................................TTTCACAGGGAGGTGTCATTTATGT............................................................................................... 25 0 3 0.33 1 1 0 0 0 0
...............................................................TTCACGGGGAGGTGTCATTTA.................................................................................................. 21 1 3 0.33 1 1 0 0 0 0
............................................................AATTTCACAGGGAGGTGTCATTT................................................................................................... 23 2 3 0.33 1 1 0 0 0 0
..............................................................TTTCACAGGGAGGTGTCATTTAA................................................................................................. 23 1 3 0.33 1 1 0 0 0 0
..............................................................TATCACAGGGAGGTGTCATTT................................................................................................... 21 1 3 0.33 1 1 0 0 0 0
...............................................................TTCACAGGGAGGTGTCATTTAA................................................................................................. 22 1 3 0.33 1 1 0 0 0 0
...............................................................TTCACAGGGCGGTGTCATTT................................................................................................... 20 1 3 0.33 1 1 0 0 0 0
...............................................................TTCACAGGGAGGTGTCATTTATA................................................................................................ 23 1 3 0.33 1 1 0 0 0 0
...............................................................TTCACAGGGAGGTGTCATTTATT................................................................................................ 23 1 3 0.33 1 1 0 0 0 0
...............................................................TTCACAGGGAGGTGTCATTTATTT............................................................................................... 24 1 3 0.33 1 1 0 0 0 0
...............................................................TTCACTGGGAGGTGTCATTTAT................................................................................................. 22 1 3 0.33 1 1 0 0 0 0
...............................................................TTCACAGGGAGGTGTCATTTTT................................................................................................. 22 1 3 0.33 1 1 0 0 0 0
..............................................................TTTCACAGGGAGGTGTCTTTT................................................................................................... 21 1 3 0.33 1 1 0 0 0 0
...............................................................TTCACAGGGAGGCGTCATTTA.................................................................................................. 21 1 3 0.33 1 1 0 0 0 0
..............................................................TTTCACAGGGAGGTTTCATTT................................................................................................... 21 1 3 0.33 1 0 1 0 0 0
..............................................................TTTCACAGGGAGGTGTCATTTT.................................................................................................. 22 1 3 0.33 1 1 0 0 0 0
...............................................................TTCACAGGGAGGTGTCATTTATG................................................................................................ 23 0 3 0.33 1 1 0 0 0 0
...............................................................TTCACTGGGAGGTGTCATTTA.................................................................................................. 21 1 3 0.33 1 1 0 0 0 0
...............................................................CTCACAGGGAGGTGTCATTTA.................................................................................................. 21 1 3 0.33 1 1 0 0 0 0
...............................................................TTCACCGGGAGGTGTCATTTT.................................................................................................. 21 2 4 0.25 1 1 0 0 0 0
.............................................................AATTCACAGGGAGGTGTCATTT................................................................................................... 22 2 4 0.25 1 1 0 0 0 0
...............................................................TTCACAGTGAGGTGTCATTTATT................................................................................................ 23 2 4 0.25 1 0 1 0 0 0
...............................................................TTGACAGGGAGGTGTCATTT................................................................................................... 20 1 5 0.20 1 1 0 0 0 0
...............................................................TTCACAGGGAGGTGTCATA.................................................................................................... 19 1 6 0.17 1 1 0 0 0 0
............................................................AATTTCACAGGGAGGTGTCAT..................................................................................................... 21 2 8 0.13 1 1 0 0 0 0

Anti-sense strand reads

TACCGTACTTATCCCTCGTAACCCAGACCCTACGGTGTAAGTGGGTAAATGACATGTAACGGAAAGTGTCCCTCCACAGTAAATACACTTGATTTGATATTTACAGTGAAAAGACTCTTCTCATTACATGTCGTACGTGACGTTTTACACCACAGGGACCCCTACCCCGACATCGACGCTCG

**********************************************..(((((((((((.((((.((((((((((.(((((((((.......)).))))))).)))))))))).)))).)))))))))))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:37 PM