ID:

mml-mir-513a-2

 Coordinate:

chrX:146474485-146474564 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.1 -32.7
mature

  1. mml-mir-513a-1  chrX:146464440-146464459 -
  2. mml-mir-513a-2  chrX:146474533-146474552 -
  3. mml-mir-513a-3  chrX:146482922-146482941 -
star

Sense Strand Reads

CGGCATGAATAGGGAGCATTGGGTCTGGGATGCCACATTCAGCCATTCAGTGTACAGTGCCTTTCACAGGGAGGTGTCATTTATGTGAACTAAAATATAAATTTCACCTTTCTGAGAAGAGTAATGTACAACATGCACTGCATATGTGGTGTCCCCGGGGATGGGGCTGTAGCTGCGAGC

***********************************************...((((((.(((.((((.((((((((((..((((((((........))))))))..)))))))))).)))).))).)))))).....********************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR116839

testes		 SRR116840

epididymis		 SRR116841

prostate		 SRR116842

seminal vesicle		 SRR116843

cortex
..............................................................TTCACAGGGAGGTGTCATTT.................................................................................................. 20 0 3 26.33 79 69 3 4 1 2
.............................................................TTTCACAGGGAGGTGTCATTT.................................................................................................. 21 0 3 23.00 69 62 2 2 3 0
..............................................................TTCACAGGGAGGTGTCATTTAT................................................................................................ 22 0 3 22.33 67 57 4 2 2 2
..............................................................TTCACAGGGAGGTGTCATTTA................................................................................................. 21 0 3 13.67 41 37 2 0 2 0
..............................................................TTCACAGGGAGGTGTCATT................................................................................................... 19 0 3 6.67 20 20 0 0 0 0
.............................................................TTTCACAGGGAGGTGTCATTTA................................................................................................. 22 0 3 6.33 19 14 3 0 2 0
.............................................................TTTCACAGGGAGGTGTCATT................................................................................................... 20 0 3 4.33 13 10 2 0 1 0
..................................................................................................AAATTTCACCTTTCTGAGAAGA............................................................ 22 0 1 2.00 2 2 0 0 0 0
.................................................................................................TAAATTTCACCTTTCTGAGAAGA............................................................ 23 0 1 2.00 2 1 1 0 0 0
.................................................................................................TAAATTTCACCTTTCTGAGAAG............................................................. 22 0 1 2.00 2 2 0 0 0 0
.............................................................TTTCACAGGGAGGTGTCATTA.................................................................................................. 21 1 3 1.33 4 4 0 0 0 0
..............................................................TTCACAGGGAGGTGTCATTTT................................................................................................. 21 1 3 1.00 3 3 0 0 0 0
..............................................................TTCACAGGGAGGTGTCATTA.................................................................................................. 20 1 4 1.00 4 4 0 0 0 0
..............................................................TTCGCAGGGAGGTGTCATTTAT................................................................................................ 22 1 3 1.00 3 3 0 0 0 0
..............................................................TTCACAGGGAGGTGTCATTTATGT.............................................................................................. 24 0 3 1.00 3 3 0 0 0 0
..............................................................TTCACCGGGAGGTGTCATTTAT................................................................................................ 22 1 3 1.00 3 3 0 0 0 0
..................................................................................................AAATTTCACCTTTCTGAGAAG............................................................. 21 0 1 1.00 1 0 0 1 0 0
..............................................................TTCACAGGGAGGTGTCAT.................................................................................................... 18 0 4 0.75 3 2 0 1 0 0
.............................................................TTTCACAGGGAGGTGTCATTAA................................................................................................. 22 1 3 0.67 2 2 0 0 0 0
.............................................................TTTCACAGGGAGGTGTCATTTAT................................................................................................ 23 0 3 0.67 2 2 0 0 0 0
..............................................................TTCACTGGGAGGTGTCATTT.................................................................................................. 20 1 3 0.67 2 2 0 0 0 0
..............................................................TTCACCGGGAGGTGTCATTTA................................................................................................. 21 1 3 0.67 2 2 0 0 0 0
.............................................................TTTCACAGGGAGGTGTCAT.................................................................................................... 19 0 4 0.50 2 2 0 0 0 0
..............................................................TTCACTGGGAGGTGTCATTTA................................................................................................. 21 1 3 0.33 1 1 0 0 0 0
..............................................................TTCACAGGGAGGCGTCATTTA................................................................................................. 21 1 3 0.33 1 1 0 0 0 0
.............................................................TTTCACAGGGAGGTGTCATTTAA................................................................................................ 23 1 3 0.33 1 1 0 0 0 0
.............................................................TTTCACAGGGAGGTGTCATTTGT................................................................................................ 23 1 3 0.33 1 1 0 0 0 0
...........................................................AATTTCACAGGGAGGTGTCATTT.................................................................................................. 23 2 3 0.33 1 1 0 0 0 0
.............................................................TTTCACAGGGAGGTGTCATTTATGT.............................................................................................. 25 0 3 0.33 1 1 0 0 0 0
..............................................................TTCACAGGGAGGTGTCATTTATT............................................................................................... 23 1 3 0.33 1 1 0 0 0 0
..............................................................TTCACAGGGAGGTGTCATTTATTT.............................................................................................. 24 1 3 0.33 1 1 0 0 0 0
..............................................................TTCACAGGGAGGTGTCATTTATA............................................................................................... 23 1 3 0.33 1 1 0 0 0 0
.............................................................TTTCACAGGGCGGTGTCATTT.................................................................................................. 21 1 3 0.33 1 1 0 0 0 0
.............................................................TTTCACAGGGAGGTGTCATTTT................................................................................................. 22 1 3 0.33 1 1 0 0 0 0
.............................................................TATCACAGGGAGGTGTCATTT.................................................................................................. 21 1 3 0.33 1 1 0 0 0 0
..............................................................TTCACAGGGAGGTGTCATTTTT................................................................................................ 22 1 3 0.33 1 1 0 0 0 0
.............................................................TTTCACAGGGAGGTTTCATTT.................................................................................................. 21 1 3 0.33 1 0 1 0 0 0
..............................................................TTCACAGGGAGGTGTCATTTATG............................................................................................... 23 0 3 0.33 1 1 0 0 0 0
..............................................................CTCACAGGGAGGTGTCATTTA................................................................................................. 21 1 3 0.33 1 1 0 0 0 0
..............................................................TTCACTGGGAGGTGTCATTTAT................................................................................................ 22 1 3 0.33 1 1 0 0 0 0
.............................................................TTTCACAGGGAGGTGTCTTTT.................................................................................................. 21 1 3 0.33 1 1 0 0 0 0
..............................................................TTCACAGGGAGGTGTCATTTAA................................................................................................ 22 1 3 0.33 1 1 0 0 0 0
..............................................................TTCACAGGGCGGTGTCATTT.................................................................................................. 20 1 3 0.33 1 1 0 0 0 0
..............................................................TTCACGGGGAGGTGTCATTTA................................................................................................. 21 1 3 0.33 1 1 0 0 0 0
..............................................................TTCACCGGGAGGTGTCATTTT................................................................................................. 21 2 4 0.25 1 1 0 0 0 0
............................................................AATTCACAGGGAGGTGTCATTT.................................................................................................. 22 2 4 0.25 1 1 0 0 0 0
..............................................................TTCACAGTGAGGTGTCATTTATT............................................................................................... 23 2 4 0.25 1 0 1 0 0 0
..............................................................TTGACAGGGAGGTGTCATTT.................................................................................................. 20 1 5 0.20 1 1 0 0 0 0
..............................................................TTCACAGGGAGGTGTCATA................................................................................................... 19 1 6 0.17 1 1 0 0 0 0
...........................................................AATTTCACAGGGAGGTGTCAT.................................................................................................... 21 2 8 0.13 1 1 0 0 0 0

Anti-sense strand reads

GCCGTACTTATCCCTCGTAACCCAGACCCTACGGTGTAAGTCGGTAAGTCACATGTCACGGAAAGTGTCCCTCCACAGTAAATACACTTGATTTTATATTTAAAGTGGAAAGACTCTTCTCATTACATGTTGTACGTGACGTATACACCACAGGGGCCCCTACCCCGACATCGACGCTCG

*********************************************...((((((.(((.((((.((((((((((..((((((((........))))))))..)))))))))).)))).))).)))))).....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:37 PM