ID:

mml-mir-509-2

 Coordinate:

chrX:146508138-146508231 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.9 -30.9 -30.5
mature

  1. mml-mir-509-2  chrX:146507271-146507293 -
  2. mml-mir-509-2  chrX:146508155-146508177 -
  3. chrUn_JH309080:261-283 +
star

  1. mml-mir-509-2  chrX:146507306-146507328 -
  2. mml-mir-509-2  chrX:146508190-146508212 -
  3. chrUn_JH309080:226-248 +

Sense Strand Reads

TGTTTCAAAGGTGAATGGGTGGGTATTAAAGCAAAACTGCCATCCTCAGACATGCTGTGTGTGGTACCCTACTACAGGCAGTGGCAATCATGTATAGTTAAAAATGATTGGTATGTCTGTGGGTAGAGTAATGCATGACACATGCAACATACATGATGACACTGTGTGTGTGTTAGAGGCATTTAGTTGCATGC

******************************************************.((((((((.(((.((((((((((((.((.(((((((............))))))).))))))))).))))).)))...))).)))))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116839

testes		 SRR116840

epididymis		 SRR116841

prostate		 SRR116842

seminal vesicle		 SRR116843

cortex
........................................................................................................TGATTGGTATGTCTGTGGGTAGA................................................................... 23 0 3 5.00 15 10 0 1 3 1
........................................................................................................TGATTGGTATGTCTGTGGGTAT.................................................................... 22 1 3 3.33 10 6 2 1 0 1
.....................................................................TACTACAGGCAGTGGCAATCATG...................................................................................................... 23 0 3 2.33 7 6 0 1 0 0
........................................................................................................TGATTGGTATGTCTGTGGGTAGT................................................................... 23 1 3 2.00 6 4 2 0 0 0
.....................................................................TACTACAGGCAGTGGCAATCA........................................................................................................ 21 0 3 2.00 6 5 1 0 0 0
........................................................................................................TGATTGGTATGTCTGTGGGTAG.................................................................... 22 0 3 1.67 5 5 0 0 0 0
.....................................................................TACTGCAGGCAGTGGCAATCAT....................................................................................................... 22 1 3 1.33 4 4 0 0 0 0
........................................................................................................TGATTGGTATGTCTGTGGGTAGTTT................................................................. 25 2 3 1.00 3 3 0 0 0 0
.....................................................................TACTGCAGGCAGTGGCAATCATGT..................................................................................................... 24 1 3 0.67 2 1 0 0 1 0
.....................................................................TACTACAGGCAGTGGCAATCATGT..................................................................................................... 24 0 3 0.67 2 1 0 0 0 1
........................................................................................................TGATTGGTATGTCTGTGGGTAA.................................................................... 22 1 3 0.67 2 2 0 0 0 0
........................................................................................................TGATTGGTATGTCTGTGGGTAGAAGT................................................................ 26 3 3 0.67 2 2 0 0 0 0
........................................................................................................TGATTGGTATGTCTGTGGGTAAT................................................................... 23 2 3 0.67 2 2 0 0 0 0
.....................................................................TACTACAGGCAGTGGCAATCAT....................................................................................................... 22 0 3 0.67 2 1 0 1 0 0
........................................................................................................TGATTGGTATGTCTGTGGGTAGAAG................................................................. 25 2 3 0.67 2 2 0 0 0 0
.....................................................................TACTACAGGCAGTGGCAATCATT...................................................................................................... 23 1 3 0.67 2 2 0 0 0 0
........................................................................................................TGATTGGTATGTCTGTGGGTTT.................................................................... 22 2 3 0.33 1 1 0 0 0 0
.....................................................................TACTACAGGCAGTGGCAATCT........................................................................................................ 21 1 3 0.33 1 1 0 0 0 0
.....................................................................TACTACAGGCAGTGGCAATCAAG...................................................................................................... 23 1 3 0.33 1 0 0 1 0 0
.....................................................................TACTGCAGGCAGTGGCAATCA........................................................................................................ 21 1 3 0.33 1 0 0 0 1 0
........................................................................................................TGATTGGTATGTCTGTGGGTAGATT................................................................. 25 1 3 0.33 1 1 0 0 0 0
.....................................................................TACTGCAGGCAGTGGCAATC......................................................................................................... 20 1 3 0.33 1 1 0 0 0 0
........................................................................................................TGATTGGTATGTCTGTTGGTAGTAT................................................................. 25 3 3 0.33 1 1 0 0 0 0
........................................................................................................TGATTGGTATGTCTGTGGGTAGAAA................................................................. 25 2 3 0.33 1 1 0 0 0 0
........................................................................................................TGATTGGTATGTCTGTTGGTAG.................................................................... 22 1 3 0.33 1 1 0 0 0 0
........................................................................................................TGATTGGTATGTCTGTGGGTAGTAT................................................................. 25 2 3 0.33 1 1 0 0 0 0
........................................................................................................TGATTGGTATGTCTGTGGGTTGAT.................................................................. 24 2 3 0.33 1 1 0 0 0 0
.....................................................................TACTACAGGCAGTGGCAATCAC....................................................................................................... 22 1 3 0.33 1 1 0 0 0 0
........................................................................................................TGATTGGTATGTCTGTGGGTATT................................................................... 23 2 3 0.33 1 1 0 0 0 0
........................................................................................................TGATTGGTATGTCTGTGGTTAGT................................................................... 23 2 3 0.33 1 1 0 0 0 0
........................................................................................................TGATTGGTATGTCTGTGGGTAGAA.................................................................. 24 1 3 0.33 1 1 0 0 0 0
.....................................................................TACGACAGGCAGTGGCAATCATG...................................................................................................... 23 1 3 0.33 1 1 0 0 0 0
........................................................................................................TGATTGGTATGTCTGTGGGTAGTAA................................................................. 25 3 3 0.33 1 1 0 0 0 0
.....................................................................TACTACAGGCAGTGGCCATCATGT..................................................................................................... 24 1 3 0.33 1 0 1 0 0 0
.....................................................................TACTACAGGCAGTGGCAATCCTGA..................................................................................................... 24 2 3 0.33 1 1 0 0 0 0
.......................................................................................................ATGATTGGTATGTCTGTGGGTAG.................................................................... 23 0 3 0.33 1 1 0 0 0 0
.....................................................................TACTGCAGGCAGTGGCAATCATTT..................................................................................................... 24 2 3 0.33 1 1 0 0 0 0
.....................................................................TACTGCAGGCAGTGGCAATCATG...................................................................................................... 23 1 3 0.33 1 1 0 0 0 0
........................................................................................................TGATTGGTATGTCTGTGGGTAGTT.................................................................. 24 2 3 0.33 1 0 1 0 0 0
........................................................................................................TGATTAGTATGTCTGTGGGTAG.................................................................... 22 1 3 0.33 1 1 0 0 0 0
........................................................................................................TGATTGGTATGTCTGTGGGTAAGA.................................................................. 24 3 5 0.20 1 1 0 0 0 0
........................................................................................................TGATTGGTATGTCTGTGGTTAT.................................................................... 22 2 5 0.20 1 1 0 0 0 0
........................................................................................................TGATTGGTATGTCTGTTGGTAA.................................................................... 22 2 6 0.17 1 1 0 0 0 0
.....................................................................TACTACAGGCTGTGGCAATCT........................................................................................................ 21 2 7 0.14 1 1 0 0 0 0
.....................................................................TACTGCATGCAGTGGCAATCA........................................................................................................ 21 2 7 0.14 1 1 0 0 0 0
........................................................................................................TGATTGGTATGTCTGGGGGAAT.................................................................... 22 3 15 0.07 1 1 0 0 0 0
.....................................................................TACTGCAGGCAGTGGCAA........................................................................................................... 18 1 16 0.06 1 0 1 0 0 0

Anti-sense strand reads

ACAAAGTTTCCACTTACCCACCCATAATTTCGTTTTGACGGTAGGAGTCTGTACGACACACACCATGGGATGATGTCCGTCACCGTTAGTACATATCAATTTTTACTAACCATACAGACACCCATCTCATTACGTACTGTGTACGTTGTATGTACTACTGTGACACACACACAATCTCCGTAAATCAACGTACG

****************************************************.((((((((.(((.((((((((((((.((.(((((((............))))))).))))))))).))))).)))...))).)))))****************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:37 PM