ID:

mml-mir-506

 Coordinate:

chrX:146487829-146487937 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-25.5 -24.9 -24.9

Sense Strand Reads

TCCCCGTATGACTATTAAGATGGTCAGGGCCACCACCATCAGCCATGCTGTGTCTAGTGCCGTTATGTGTAGTGCCTTATTCAGGAAGGTGTTACTTAATATATTAATATTTGTAAGGCACCCTTCTGAGTAGAGTAATGTGCAACATGGACATCATTTGTGGTGGCATTGGTAATAATGAGTGGACTTTCAGTGATGATACTGCCCTC

**************************************************************.((((((((.(((.((((((((((.((((((((..(((((....))))).)))..))))).)))))))))).)))...))).)))))************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR116839

testes		 SRR116840

epididymis		 SRR116841

prostate		 SRR116842

seminal vesicle		 SRR116844

epididymis		 SRR116843

cortex
................................................................................................................GTAAGGCACCCTTCTGAGTAGA........................................................................... 22 0 1 71.00 71 64 3 3 0 0 1
.............................................................................TATTCAGGAAGGTGTTACTTAA.............................................................................................................. 22 0 1 36.00 36 29 4 1 1 0 1
.............................................................................TATTCAGGAAGGTGTTACTTA............................................................................................................... 21 0 1 20.00 20 16 1 2 1 0 0
.............................................................................TATTCAGGAAGGTGTTACTT................................................................................................................ 20 0 1 18.00 18 12 4 1 1 0 0
................................................................................................................GTAAGGCACCCTTCTGAGTAG............................................................................ 21 0 1 16.00 16 15 0 0 1 0 0
.............................................................................TATTCAGGAAGGTGTTACTTAAT............................................................................................................. 23 0 1 14.00 14 11 1 1 0 0 1
...............................................................................................................TGTAAGGCACCCTTCTGAGTAGA........................................................................... 23 0 1 12.00 12 10 1 0 1 0 0
................................................................................................................GTAAGGCACCCTTCTGAGTAGAATC........................................................................ 25 2 1 4.00 4 0 0 0 0 4 0
................................................................................................................GTAAGGCACCCTTCTGAGTAGAAA......................................................................... 24 2 1 4.00 4 4 0 0 0 0 0
.............................................................................................................TTTGTAAGGCACCCTTCTGAGTAGA........................................................................... 25 0 1 3.00 3 2 0 0 1 0 0
.............................................................................TATTCAGGAAGGTGTTACTTAATA............................................................................................................ 24 0 1 3.00 3 2 0 1 0 0 0
.............................................................................TATTCAGGAAGGTGTTACT................................................................................................................. 19 0 2 3.00 6 3 2 0 1 0 0
................................................................................................................GTAAGGCACCCTTCTGAGTAGAA.......................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................................TTTGTAAGGCACCCTTCTGAGTA............................................................................. 23 0 1 2.00 2 2 0 0 0 0 0
...............................................................................................................TGTAAGGCACCCTTCTGAGTAGT........................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
.............................................................................................................TTTGTAAGGCACCCTTCTGAGT.............................................................................. 22 0 1 2.00 2 2 0 0 0 0 0
..............................................................................................................TTGTAAGGCACCCTTCTGAGTAGA........................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................TGTAAGGCACCCTTCTGAGTAG............................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................TTTGTAAGGCACCCTTCTGA................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0
.............................................................................TATTCTGGAAGGTGTTACTTAA.............................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................TATTCAGGAAGGTGTTACTTAATT............................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0
.............................................................................TATTCAGGAAGTTGTTACTTA............................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................TATTCAGTAAGGTGTTACTTAAT............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................................TATTCAGGAAGGTGTTACTTAAA............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................................TATTCAGGAATGTGTTACTTAA.............................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................GTAAGGCACCCTTCTGAGTAGAAT......................................................................... 24 1 1 1.00 1 0 1 0 0 0 0
...............................................................................................................TGTAAGGCACCCTTCTGAGTAGAA.......................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................GTAAGGCACCCTTCTGAGTAT............................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................TATACAGGAAGGTGTTACTTAA.............................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................TATTCAGGAAGGTGTTCCTT................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................GTAAGGCACCATTCTGAGTAGA........................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................................TGTAATGCACCCTTCTGAGTAGA........................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................GTAAGGCACCCTTCTTAGTAGA........................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................................................................AGGCACCCTTCTGAGTAGAGTTCGGT.................................................................... 26 3 1 1.00 1 0 0 0 1 0 0
.............................................................................TATTCAGGAAGGTGTTACTTAAC............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................GTAAGGCACCCTTCTGAGTAGAC.......................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................TAAGGCACCCTTCTGAGTAGAA.......................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................GTAAGTCACCCTTCTGAGTAGA........................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.............................................................................................................TTTGTAATGCACCCTTCTGAGTAGA........................................................................... 25 1 1 1.00 1 0 0 1 0 0 0
.............................................................................TATTCTGGAAGGTGTTACTTA............................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.............................................................................TATGCAGGAAGGTGTTACTTAAT............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................................TATTCAGGAAGGTGTTAATT................................................................................................................ 20 1 2 0.50 1 1 0 0 0 0 0
................................................................................................................GTAAGGCACCCTTCTTAGTAGAAA......................................................................... 24 3 2 0.50 1 1 0 0 0 0 0

Anti-sense strand reads

AGGGGCATACTGATAATTCTACCAGTCCCGGTGGTGGTAGTCGGTACGACACAGATCACGGCAATACACATCACGGAATAAGTCCTTCCACAATGAATTATATAATTATAAACATTCCGTGGGAAGACTCATCTCATTACACGTTGTACCTGTAGTAAACACCACCGTAACCATTATTACTCACCTGAAAGTCACTACTATGACGGGAG

************************************************************.((((((((.(((.((((((((((.((((((((..(((((....))))).)))..))))).)))))))))).)))...))).)))))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:37 PM