ID:

mml-mir-504

 Coordinate:

chrX:137874254-137874336 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-50.8

Sense Strand Reads

CCACATAGAATCACAAGAAGACAGAAAATATGGAGTGGAATGTTGAATCAGCTGCTGTTGGGAGACCCTGGTCTGCACTCTATCTGTATTCTTACTGAAGGGAGCGCAGGGCAGGGTTTCCCATACAGAGGGCACAGACTACCACCGTATGGCAAATGTTGACTGGAACTCAACTTCAAAGCC

***********************************(((...(((......(((.((((((((((((((((.(((((.((((.((.(((....))).))..)))).))))).)))))))))))).))))..)))...)))..)))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116841

prostate		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116839

testes		 SRR116844

epididymis		 SRR116845

epididymis
..............................................................AGACCCTGGTCTGCACTCTATC................................................................................................... 22 0 1 204.00 204 127 38 30 9 0 0 0
...............................................................GACCCTGGTCTGCACTCTATC................................................................................................... 21 0 1 162.00 162 142 7 12 1 0 0 0
..............................................................AGACCCTGGTCTGCACTCTAT.................................................................................................... 21 0 1 129.00 129 91 16 16 5 1 0 0
...............................................................GACCCTGGTCTGCACTCTAT.................................................................................................... 20 0 1 87.00 87 59 14 7 5 2 0 0
..............................................................AGACCCTGGTCTGCACTCTATCT.................................................................................................. 23 0 1 44.00 44 14 28 2 0 0 0 0
..............................................................AGACCCTGGTCTGCACTCTATCA.................................................................................................. 23 1 1 19.00 19 12 4 3 0 0 0 0
...............................................................GACCCTGGTCTGCACTCTATCT.................................................................................................. 22 0 1 14.00 14 11 1 1 1 0 0 0
...............................................................GACCCTGGTCTGCACTCTATCA.................................................................................................. 22 1 1 7.00 7 3 1 0 2 1 0 0
..............................................................AGACCCTGGTCTGCACTCTATA................................................................................................... 22 1 1 6.00 6 4 2 0 0 0 0 0
..............................................................AGACCCTGGTCTGCACTCTA..................................................................................................... 20 0 1 5.00 5 4 1 0 0 0 0 0
..............................................................AGACCCTGGTCTGCACTCT...................................................................................................... 19 0 1 3.00 3 1 0 1 1 0 0 0
...............................................................GACCCTGGTCTGCACTCTATCAA................................................................................................. 23 2 1 3.00 3 3 0 0 0 0 0 0
..............................................................AGACCCTGGTCTGCCCTCTATC................................................................................................... 22 1 1 3.00 3 2 1 0 0 0 0 0
...............................................................GACCCTGGTCTGCACTCTATA................................................................................................... 21 1 1 3.00 3 2 1 0 0 0 0 0
..............................................................AGACCCTGGTCTGCACTCTATT................................................................................................... 22 1 1 3.00 3 1 2 0 0 0 0 0
...............................................................GACCCTGGTCTGCTCTCTATC................................................................................................... 21 1 1 3.00 3 3 0 0 0 0 0 0
...............................................................GACCCTGGTCTGCACTCTA..................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0
.............................................................AAGACCCTGGTCTGCACTCTATC................................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0
..............................................................AGACCCTGGTCTGCACTCTATCATC................................................................................................ 25 3 1 2.00 2 0 0 0 0 0 1 1
...............................................................GACCCTGGTCTTCACTCTATC................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0
...............................................................GACCCTGGTCTGCACTCTCTC................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0
..............................................................AGACCCTCGTCTGCACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................GACCCTGGTCTGCACTCT...................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................AGACCCTGGTCTGCACTCTAAA................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
...............................................................GACCCTGGTTTGCACTCTATCT.................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................AGACCCTGGTCTGTACTCTATC................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................AAGGGAGCGCAGGGCAGGGTTTCA.............................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0
...............................................................GACCCTGTTCTGCACTCTATC................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................GACCCTGGTCTGCACTCTATCTGTATTATC.......................................................................................... 30 2 1 1.00 1 0 0 0 0 0 1 0
..............................................................AGACCCTGGTCTGCACTCTAA.................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0
...............................................................GACCCTGGTCTGCTCTCTAT.................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................AGGGAGCGCAGGGCAGGGTTTT............................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................AGACCCTGGTCTGCACTCTATTAT................................................................................................. 24 3 1 1.00 1 0 0 0 0 1 0 0
..............................................................AGACCCTGCTCGGCACTCTATCT.................................................................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0
...............................................................GACCCTGGTCTGCACTCTATCATC................................................................................................ 24 3 2 1.00 2 0 0 0 0 0 1 1
..............................................................AGACCCTGGTCTGTACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................AGACCCTGGTCTTCACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................AGACCCTGGTCTTCACTCTATC................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................AGACCCTGGTCTGCACTCTATAC.................................................................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0
..............................................................AGACCCTGGTCTGCACTCTCTC................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
..............................................................AGACCCTGGTCTGCTCTCTATC................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................AGACCCTTGTCTGCACTCTATC................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................AGCCCCTGGTCTGCACTCTAT.................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................AGACCCTGGTCTGCACTCTATCAA................................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0
...............................................................GACCCCGGTCTGCACTCTATC................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................AGGGAGCGCAGGGCAGGGTTTCAAATC.......................................................... 27 3 1 1.00 1 0 0 0 0 0 0 1
...............................................................GACCCTGGTCTGCCCTCTATC................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................AGGGAGCGCAGGGCAGGGTTTTT.............................................................. 23 2 2 0.50 1 1 0 0 0 0 0 0
..............................................................AGACCCTGGTCTGCACTCTATAA.................................................................................................. 23 2 2 0.50 1 0 0 1 0 0 0 0
...............................................................GACCCTGGTCTGCACTCTCT.................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0
...............................................................GACCCTGGTCTGCACTCTT..................................................................................................... 19 1 2 0.50 1 1 0 0 0 0 0 0
...............................................................GACCCTGGTCTTCACTCTAT.................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0
...............................................................GACCCTGGTCTGCACTGTAT.................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0
..............................................................AGACCCTGGTCTTCACTCTA..................................................................................................... 20 1 3 0.33 1 1 0 0 0 0 0 0
...............................................................GACCCTGGTCTTCACTCTACC................................................................................................... 21 2 4 0.25 1 1 0 0 0 0 0 0
..............................................................AGACCCTTGTCTTCACTCTAT.................................................................................................... 21 2 5 0.20 1 1 0 0 0 0 0 0

Anti-sense strand reads

GGTGTATCTTAGTGTTCTTCTGTCTTTTATACCTCACCTTACAACTTAGTCGACGACAACCCTCTGGGACCAGACGTGAGATAGACATAAGAATGACTTCCCTCGCGTCCCGTCCCAAAGGGTATGTCTCCCGTGTCTGATGGTGGCATACCGTTTACAACTGACCTTGAGTTGAAGTTTCGG

***********************************(((...(((......(((.((((((((((((((((.(((((.((((.((.(((....))).))..)))).))))).)))))))))))).))))..)))...)))..)))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:35 PM