ID:

mml-mir-496

 Coordinate:

chr7:164959019-164959120 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-38.3 -38.3 -38.3

Sense Strand Reads

GAATCCCGTCCGTCCTCAGGCCTGCTGCTGGGGCGCGCTGGAAGTGAGCGCCCGAGTCAGGTACTCGAATGGAGGTTGTCCATGGTGTGTTCATTTTATTTATGATGAGTATTACATGGCCAATCTCCTTTCGGTACTCAATTCTTCTTGGGAAACGTCACGAGGGGCAAGCCCAGCCGGCACCTGCTCAGGGTAAGGAAGT

**************************************.....................(((((.((((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))...************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116840

epididymis		 SRR116841

prostate		 SRR116844

epididymis
.........................................................................................................TGAGTATTACATGGCCAATCT............................................................................ 21 0 1 15.00 15 12 2 1 0
...........................................................................................................AGTATTACATGGCCAATCTCC.......................................................................... 21 0 1 10.00 10 8 1 1 0
.........................................................................................................TGAGTATTACATGGCCAATCTC........................................................................... 22 0 1 9.00 9 7 1 1 0
.....................................................GAGTCAGGTACTCGAATGGA................................................................................................................................. 20 0 1 2.00 2 2 0 0 0
...........................................................................................................AGTATTACATGGCCAATCTCT.......................................................................... 21 1 1 2.00 2 2 0 0 0
...........................................................................................................AGTATTACATGGCCAATCTCCATC....................................................................... 24 2 1 2.00 2 0 0 0 2
.........................................................................................................TGAGTATTACATGGCCCATCT............................................................................ 21 1 1 1.00 1 1 0 0 0
.........................................................................................................TGCGTATTACATGGCCCATCTC........................................................................... 22 2 1 1.00 1 1 0 0 0
.........................................................................................................TGAGTATTACATTGCCAATCTC........................................................................... 22 1 1 1.00 1 1 0 0 0
...........................................................................................................AGTATTACATGGCCAATCTCCAA........................................................................ 23 2 1 1.00 1 1 0 0 0
.........................................................................................................TGAGTATTACATGTCCAATCTC........................................................................... 22 1 1 1.00 1 1 0 0 0
.........................................................................................................TGAGTATTACATGGCCAAT.............................................................................. 19 0 1 1.00 1 1 0 0 0
......................................................AGTCAGGTACTCGAATGGA................................................................................................................................. 19 0 1 1.00 1 1 0 0 0
.........................................................................................................TGAGTATTACATGGCCAATCTATC......................................................................... 24 3 3 0.67 2 0 0 0 2
........................CTGCGGGGGCGCGCTGG................................................................................................................................................................. 17 1 8 0.13 1 0 0 1 0

Anti-sense strand reads

CTTAGGGCAGGCAGGAGTCCGGACGACGACCCCGCGCGACCTTCACTCGCGGGCTCAGTCCATGAGCTTACCTCCAACAGGTACCACACAAGTAAAATAAATACTACTCATAATGTACCGGTTAGAGGAAAGCCATGAGTTAAGAAGAACCCTTTGCAGTGCTCCCCGTTCGGGTCGGCCGTGGACGAGTCCCATTCCTTCA

*************************************************************.....................(((((.((((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))...************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:31 PM