ID:

mml-mir-494

 Coordinate:

chr7:164928535-164928615 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.6 -39.2 -39.2 -38.8

Sense Strand Reads

CAGTTTTGTTTTGATTTTTTTTGTTTGTTTTTTGATCAGTGCTAATTGTCGATACTCGAAGGAGAGGTTGTCCGTGTTGTCTTCTCTTTATTTATGATGAAACATACACGGGAAACCTCTTCTTTAGTATCAAATCCCACCCTGGAGGCACTTCCTGTTCCTGATGCAGCCTTCAGGGAGG

***********************************((..............(((((.((((((((((((..(((((((((.(((((.........)).)))))).))))))..)))))))))))))))))..............))*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116844

epididymis		 SRR116845

epididymis		 SRR116840

epididymis		 SRR116843

cortex		 SRR116841

prostate		 SRR116842

seminal vesicle		 SRR116839

testes
.................................................................................................TGAAACATACACGGGAAACCTCTATC.......................................................... 26 3 1 113.00 113 74 39 0 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACCTCT............................................................. 23 0 1 108.00 108 0 0 47 24 20 13 4
.................................................................................................TGAAACATACACGGGAAACCTCATC........................................................... 25 1 1 67.00 67 41 26 0 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACCTATC............................................................ 24 2 1 16.00 16 13 3 0 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACCTC.............................................................. 22 0 1 9.00 9 0 0 4 3 1 1 0
.................................................................................................TGAAACATACACGGGAAACCTCTTATC......................................................... 27 2 1 6.00 6 1 5 0 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACCT............................................................... 21 0 1 5.00 5 0 0 2 0 3 0 0
.................................................................................................TGAAACATACACGGGAAACCTCA............................................................. 23 1 1 3.00 3 0 0 3 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACCTCTTC........................................................... 25 0 1 3.00 3 2 1 0 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACCTCTT............................................................ 24 0 1 2.00 2 0 0 0 2 0 0 0
.................................................................................................TGAAACATACACGGCAAACCTTATC........................................................... 25 3 1 2.00 2 0 2 0 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACCATC............................................................. 23 3 6 1.67 10 7 3 0 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACCTCTA............................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACCTCTAATC......................................................... 27 3 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACCTCATCC.......................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACCTCTACC.......................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACCTCTCTC.......................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACA................................................................ 20 1 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................TGAAACATACACGGGACACCTCATC........................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACCTCTTTC.......................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TGAAACATACACGGGTAACCTATC............................................................ 24 3 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................TGAAACATACACGGTAAACCTCT............................................................. 23 1 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACCTCCAT........................................................... 25 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACCTCTAA........................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................TGAAACATACGCGGGAAACCTCATC........................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TGAAACATACACGGTAAACCTCATC........................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................GAAACATACACGGGAAACCTCT............................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACCTCTTTA.......................................................... 26 2 1 1.00 1 0 0 0 0 0 1 0
.................................................................................................TGAAACATACACGGGATACCTCATC........................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................TTCTGAAACATACACGGGAAACCTCT............................................................. 26 2 1 1.00 1 0 0 0 1 0 0 0
.................................................................................................TGAAACATACACGGGAAACATC.............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TGAAACATACACGGAAAACCTCTC............................................................ 24 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TGAAACATACACGGGAAGCCTCATC........................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TGAAACATACACGGGAAACCAATC............................................................ 24 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TGAAACATACACCGGAAACCTCATC........................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TGAAACATACACGGGAACCCTCATC........................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TGAAACATACACGGGATC.................................................................. 18 2 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

GTCAAAACAAAACTAAAAAAAACAAACAAAAAACTAGTCACGATTAACAGCTATGAGCTTCCTCTCCAACAGGCACAACAGAAGAGAAATAAATACTACTTTGTATGTGCCCTTTGGAGAAGAAATCATAGTTTAGGGTGGGACCTCCGTGAAGGACAAGGACTACGTCGGAAGTCCCTCC

***********************************((..............(((((.((((((((((((..(((((((((.(((((.........)).)))))).))))))..)))))))))))))))))..............))*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:29 PM