ID:

mml-mir-490

 Coordinate:

chr3:176059533-176059660 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-37.0 -37.0 -37.0

Sense Strand Reads

GTTTTTTATTCTTCAACCAACGGTGGTGAAGAGGATCTCCCTTCACTTTATGGAGGCCTTGCTGGTTTGGAAAGTTCATTGTTCGACACCATGGATCTCCAGGTGGGTCAAGTTTAGAGATGCACCAACCTGGAGGACTCCATGCTGTTGAGCTGTTCACAAGCAGCGGACACTTCCAACTCCATCTTCCCAAGAACTAAATGGGTGTCTTCTATAGTGTATGTGCAA

*************************************************************************((..((.((((((((.(((((((((((((((.(((((..........)).))).)))))))))..)))))).)))))))).))..))...***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116841

prostate		 SRR116842

seminal vesicle		 SRR116844

epididymis
.............................................................................................................................CAACCTGGAGGACTCCATGCTGT................................................................................ 23 0 1 183.00 183 161 20 2 0
.............................................................................................................................CAACCTGGAGGACTCCATGCTG................................................................................. 22 0 1 151.00 151 145 6 0 0
.............................................................................................................................CAACCTGGAGGACTCCATGCTGA................................................................................ 23 1 1 107.00 107 101 6 0 0
........................................................................................CCATGGATCTCCAGGTGGGT........................................................................................................................ 20 0 1 45.00 45 45 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCATGCT.................................................................................. 21 0 1 35.00 35 33 2 0 0
.............................................................................................................................CAACCTGGAGGACTCCATGCTGAA............................................................................... 24 2 2 13.50 27 24 3 0 0
........................................................................................CCATGGATCTCCAGGTGGGTAA...................................................................................................................... 22 1 1 12.00 12 9 1 2 0
............................................................................................................................CCAACCTGGAGGACTCCATGCTG................................................................................. 23 0 1 9.00 9 7 2 0 0
.............................................................................................................................CAACCTGGAGGACTCCATGCTT................................................................................. 22 1 1 7.00 7 7 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCATGC................................................................................... 20 0 1 6.00 6 6 0 0 0
........................................................................................CCATGGATCTCCAGGTGGGTAT...................................................................................................................... 22 2 3 5.33 16 16 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCATGCTGTA............................................................................... 24 1 1 5.00 5 4 1 0 0
.............................................................................................................................CAACCTGGAGGACTCCATGCTTT................................................................................ 23 1 1 5.00 5 4 1 0 0
........................................................................................CCATGGATCTCCAGGTGGG......................................................................................................................... 19 0 1 5.00 5 4 1 0 0
............................................................................................................................CCAACCTGGAGGACTCCATGCTGT................................................................................ 24 0 1 4.00 4 4 0 0 0
........................................................................................CCATGGATCTCCAGGTGGGTA....................................................................................................................... 21 1 2 4.00 8 8 0 0 0
.............................................................................................................................CAACCTGGAGGACTTCATGCTG................................................................................. 22 1 1 4.00 4 4 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCATGCTGTT............................................................................... 24 0 1 3.00 3 3 0 0 0
........................................................................................CCATGGATCTCCAGGTGGGTTT...................................................................................................................... 22 2 1 2.00 2 2 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCCTGCTGT................................................................................ 23 1 1 2.00 2 2 0 0 0
...........................................................................................................................AACAACCTGGAGGACTCCATGCT.................................................................................. 23 1 1 2.00 2 2 0 0 0
.............................................................................................................................CAACCTGTAGGACTCCATGCTG................................................................................. 22 1 1 2.00 2 2 0 0 0
........................................................................................CCCTGGATCTCCAGGTGGGT........................................................................................................................ 20 1 1 2.00 2 1 1 0 0
.............................................................................................................................CAACCTGGAGGACTCCACGCTG................................................................................. 22 1 1 2.00 2 2 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCATGCTGAAA.............................................................................. 25 3 3 1.33 4 4 0 0 0
..............................................................................................................................AACCTGGAGGACTCCATGCT.................................................................................. 20 0 1 1.00 1 1 0 0 0
..........................................................................................................................CACCAACCTGGAGGACTCCATG.................................................................................... 22 0 1 1.00 1 1 0 0 0
........................................................................................CCATGGATCTCCAGGTGGGTT....................................................................................................................... 21 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCATGCA.................................................................................. 21 1 1 1.00 1 1 0 0 0
........................................................................................CCATGGATCTCTAGGTGGGT........................................................................................................................ 20 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGTACTCCATGCTGT................................................................................ 23 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCATGTTT................................................................................. 22 2 1 1.00 1 1 0 0 0
........................................................................................CCATGGATCTCCAGGTGGGTAAA..................................................................................................................... 23 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCATGA................................................................................... 20 1 1 1.00 1 1 0 0 0
........................................................................................CCATGGATCTCCAGGTAGGT........................................................................................................................ 20 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGTAGGACTCCACGCTGT................................................................................ 23 2 1 1.00 1 0 1 0 0
........................................................................................CCATGGATCTCCAGGTGGTT........................................................................................................................ 20 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAGCCTGGAGGACTCCATGCTGT................................................................................ 23 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCCGGAGGACTCCATGCTG................................................................................. 22 1 1 1.00 1 1 0 0 0
..............................................................................................................................AACCTGGAGGACTCCATGCTGC................................................................................ 22 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCATGCTA................................................................................. 22 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCATGCTACTGG............................................................................. 26 3 1 1.00 1 1 0 0 0
........................................................................................CCATGGATCTCCAGGTGGGG........................................................................................................................ 20 1 1 1.00 1 1 0 0 0
............................................................................................................................CCAACCTGGAGGACTCCATGCTGA................................................................................ 24 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCCTGCTGC................................................................................ 23 2 1 1.00 1 1 0 0 0
.............................................................................................................................CCACCTGGAGGACTCCATGCTGA................................................................................ 23 2 1 1.00 1 1 0 0 0
........................................................................................CCATGGATCTCCAGGTGGGTCAAA.................................................................................................................... 24 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGTCTCCATGCTG................................................................................. 22 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGTAGTACTCCATGCTGT................................................................................ 23 2 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCATGCTGAG............................................................................... 24 2 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCCTGCT.................................................................................. 21 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCACGCTGA................................................................................ 23 2 1 1.00 1 1 0 0 0
........................................................................................CCATGGATCTCCAGGGGGGT........................................................................................................................ 20 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGATTCCATGCT.................................................................................. 21 1 1 1.00 1 1 0 0 0
........................................................................................CCATGGATCTCCCGGTGGGT........................................................................................................................ 20 1 1 1.00 1 1 0 0 0
..........................................................................................................................CACCAACCTGGAGGACTCCAT..................................................................................... 21 0 1 1.00 1 1 0 0 0
........................................................................................CCATGGATCTCCAGGTGGGTAAAA.................................................................................................................... 24 2 1 1.00 1 1 0 0 0
............................................................................................................................CCAACCTTGAGGACTCCATGCTGT................................................................................ 24 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCATTCT.................................................................................. 21 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGATTCCATGCTGA................................................................................ 23 2 1 1.00 1 1 0 0 0
........................................................................................CCATGGATCTCCAGGTGGGTTA...................................................................................................................... 22 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCCTGCTG................................................................................. 22 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGCCTCCATGCT.................................................................................. 21 1 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCATTCTGA................................................................................ 23 2 1 1.00 1 0 1 0 0
........................................................................................CCATGGATCTCCAGGTGGTTAAA..................................................................................................................... 23 2 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCACGCTGG................................................................................ 23 2 1 1.00 1 1 0 0 0
.............................................................................................................................CAACCTGGCGGACTCCATGCTGTT............................................................................... 24 1 1 1.00 1 0 1 0 0
.............................................................................................................................CAACCTGGAGGACTCCCTGCTGA................................................................................ 23 2 3 0.67 2 2 0 0 0
........................................................................................CCATGGATCTCCAGGTGGA......................................................................................................................... 19 1 2 0.50 1 1 0 0 0
.............................................................................................................................CAACCTGGAGTACTCCATGCTGA................................................................................ 23 2 2 0.50 1 1 0 0 0
............................................................................................................................CCAACCTGGAGGACTCCATGCTGAA............................................................................... 25 2 2 0.50 1 1 0 0 0
.............................................................................................................................CAACCTCGAGGCCTCCATGCTGT................................................................................ 23 2 2 0.50 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGTCTCCATGCTGTAA.............................................................................. 25 3 2 0.50 1 1 0 0 0
........................................................................................CCATGGATCTCCAGGTGGGA........................................................................................................................ 20 1 2 0.50 1 1 0 0 0
........................................................................................CCATGGATCTCGAGGTGGGTAA...................................................................................................................... 22 2 2 0.50 1 1 0 0 0
........................................................................................CCCTGGATCTCCAGGTGGGTAA...................................................................................................................... 22 2 3 0.33 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGCCTCCCTGCTG................................................................................. 22 2 4 0.25 1 1 0 0 0
........................................................................................CCATGGATCTCCAGGTGTGTA....................................................................................................................... 21 2 5 0.20 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCATGCTAA................................................................................ 23 2 5 0.20 1 1 0 0 0
.............................................................................................................................CAACCTGGAGGACTCCATGCTTAA............................................................................... 24 3 6 0.17 1 1 0 0 0
........................................................................................CCATGGATCTCCAGGTGGGTTTT..................................................................................................................... 23 3 6 0.17 1 1 0 0 0
......................GTCGTGAAGAGGATC............................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1

Anti-sense strand reads

CAAAAAATAAGAAGTTGGTTGCCACCACTTCTCCTAGAGGGAAGTGAAATACCTCCGGAACGACCAAACCTTTCAAGTAACAAGCTGTGGTACCTAGAGGTCCACCCAGTTCAAATCTCTACGTGGTTGGACCTCCTGAGGTACGACAACTCGACAAGTGTTCGTCGCCTGTGAAGGTTGAGGTAGAAGGGTTCTTGATTTACCCACAGAAGATATCACATACACGTT

*****************************************************************((..((.((((((((.(((((((((((((((.(((((..........)).))).)))))))))..)))))).)))))))).))..))...************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:23 PM