ID:

mml-mir-487b

Coordinate:

chr7:164944875-164944958 +

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.3 -33.7 -33.7

Sense Strand Reads

AGACATACCAAGTCCACCCAAGGCAGTGGCTTTCTTTTCCGTGCTAACCTTTGGTACTTGGAGAGTGGTTATCCCTGTCCTGTTCGTTTTGCTCGTGTCGAATCGTACAGGGTCATCCACTTTTTCAGTATCAAGAGCGCAGACTCTGGAGCTCGATTTCCTGTGTTTGGATCCCACCTCTGAC

************************************************.(((((((((.(((((((((....((((((...(((((............)))))...))))))....))))))))).)))))))))..***********************************************
Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex
SRR116840

epididymis
SRR116841

prostate
SRR116844

epididymis
SRR116842

seminal vesicle
SRR116845

epididymis
SRR116839

testes
....................................................................................................AATCGTACAGGGTCATCCACTT.............................................................. 22 0 1 1468.00 1468 1242 98 103 0 19 0 6
....................................................................................................AATCGTACAGGGTCATCCACTTT............................................................. 23 0 1 153.00 153 106 17 24 0 5 0 1
....................................................................................................AATCGTACAGGGTCATCCACT............................................................... 21 0 1 122.00 122 91 20 5 0 4 0 2
.....................................................................................................ATCGTACAGGGTCATCCACTTT............................................................. 22 0 1 60.00 60 48 3 6 0 3 0 0
....................................................................................................AATCGTACAGGGTCATCCACTTA............................................................. 23 1 1 30.00 30 15 8 5 0 2 0 0
....................................................................................................AATCGTACAGGGTCATCCCCTT.............................................................. 22 1 1 26.00 26 25 1 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCACTATC............................................................ 24 2 1 20.00 20 0 0 0 13 0 7 0
....................................................................................................AATCGTACAGGGTCATCCACTTATC........................................................... 25 2 1 19.00 19 0 0 0 15 0 4 0
.....................................................................................................ATCGTACAGGGTCATCCACTT.............................................................. 21 0 1 15.00 15 10 2 2 0 1 0 0
......................................................................................................TCGTACAGGGTCATCCACTTT............................................................. 21 0 1 15.00 15 14 1 0 0 0 0 0
......................................................................................................TCGTACAGGGTCATCCACTTTATC.......................................................... 24 1 1 11.00 11 0 0 0 7 0 4 0
....................................................................................................AATCGTACAGGGTCATCCACTC.............................................................. 22 1 1 8.00 8 8 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCACTA.............................................................. 22 1 1 7.00 7 1 4 0 1 0 1 0
....................................................................................................AATCGTACAGGTTCATCCACTT.............................................................. 22 1 1 6.00 6 5 0 1 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCCCTTT............................................................. 23 1 1 6.00 6 6 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCAC................................................................ 20 0 1 6.00 6 5 0 1 0 0 0 0
.....................................................................................................ATCGTACAGGGTCATCCACTTA............................................................. 22 1 1 5.00 5 5 0 0 0 0 0 0
...............................................................AGTGGTTATCCCTGTCCTGTTCG.................................................................................................. 23 0 1 5.00 5 5 0 0 0 0 0 0
....................................................................................................AATCGTACATGGTCATCCACTT.............................................................. 22 1 1 4.00 4 3 0 1 0 0 0 0
....................................................................................................AATCGTACAGGGGCATCCACTT.............................................................. 22 1 1 4.00 4 4 0 0 0 0 0 0
.....................................................................................................ATCGTACAGGGTCATCCACTTTATC.......................................................... 25 1 1 4.00 4 0 0 0 3 0 1 0
.....................................................................................................ATCGTACAGGGTCATCCACTTTA............................................................ 23 1 1 4.00 4 4 0 0 0 0 0 0
......................................................................................................TCGTACAGGGTCATCCACTTTT............................................................ 22 0 1 4.00 4 4 0 0 0 0 0 0
......................................................................................................TCGTACAGGGTCATCCACTTTTT........................................................... 23 0 1 3.00 3 1 1 0 0 1 0 0
......................................................................................................TCGTACAGGGTCATCCACTTTA............................................................ 22 1 1 3.00 3 2 0 1 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCACTAT............................................................. 23 1 1 3.00 3 0 0 0 0 0 3 0
....................................................................................................AATCGTACAGTGTCATCCACTT.............................................................. 22 1 1 3.00 3 3 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCACTTTTATC......................................................... 27 3 1 3.00 3 0 0 0 2 0 1 0
........................................................................................................GTACAGGGTCATCCACTT.............................................................. 18 0 1 2.00 2 1 0 0 0 1 0 0
....................................................................................................AATCGTACAGGGTCATCTACT............................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................GTACAGGGTCATCCACTTAATC.......................................................... 22 2 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................AATCGTACAGCGTCATCCACATC............................................................. 23 3 1 2.00 2 0 0 0 2 0 0 0
................................................................GTGGTTATCCCTGTCCTGTTCG.................................................................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0
......................................................................................................TCGTACAGGGTCATCCACTAT............................................................. 21 1 1 2.00 2 1 1 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCACATC............................................................. 23 2 1 2.00 2 0 0 0 0 0 2 0
.................................................................TGGTTATCCCTGTCCTGTTCG.................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................AATCGTACGGGGTCATCCACTT.............................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCACTTTATC.......................................................... 26 1 1 2.00 2 0 0 0 0 0 2 0
....................................................................................................AGTCGTACAGGGTCATCCACTT.............................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................AATCGTACAGGATCATCCACTT.............................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCCCT............................................................... 21 1 1 2.00 2 1 1 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCTCTT.............................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................GTACAGGGTCATCCACTTTATC.......................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCA................................................................. 19 0 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCATTT.............................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCACCT.............................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCACTTAT............................................................ 24 1 1 2.00 2 0 0 0 2 0 0 0
....................................................................................................AATCGTACAGGGTCATCCACTTAATC.......................................................... 26 2 1 2.00 2 0 0 0 2 0 0 0
....................................................................................................AATCGTACAGGGTCATCAACTT.............................................................. 22 1 1 2.00 2 1 1 0 0 0 0 0
....................................................................................................AATCGTACAGGGTTATCCACTT.............................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................ATCGTACAGGGTCATCCACTTTT............................................................ 23 0 1 2.00 2 0 2 0 0 0 0 0
....................................................................................................AATCGTACAGGGCCATCCACTT.............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGGACAGGGTCATCCACTT.............................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCAT................................................................ 20 1 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................TCGTACAGGGTCATCCCCTTTATC.......................................................... 24 2 1 1.00 1 0 0 0 0 0 1 0
....................................................................................................AATCGTACAGGGTCATCCTCT............................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCACCCACTT.............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGCCATCCCCTT.............................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTGCAGGGTCATCCACT............................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCACTCT............................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTTCAGGGTCATCCACTT.............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................AGTGGTTATCCCTGTCCTGTTC................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCACAA.............................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TCGTACAGGGGCATCCACTTTATC.......................................................... 24 2 1 1.00 1 0 0 0 1 0 0 0
.....................................................................................................ATCGTACAGGGTCATCCACTTC............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATACACT............................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACACGGTCATCCACTTATC........................................................... 25 3 1 1.00 1 0 0 0 1 0 0 0
...............................................................AGTGGTTATCCCTGTCCTGTT.................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCATACAGGGTCATCCACTT.............................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................AATCGTACAGGGACATCCACTTT............................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACCGTGTCATCCACTT.............................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................GTACAGGGTCATCCCCTTT............................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACCGGGTCATCCACTT.............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................ACTCGTACAGGGTCATCCACTTA............................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCACTTAA............................................................ 24 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCTACTT.............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCACCTC............................................................. 23 2 1 1.00 1 0 0 0 0 0 1 0
....................................................................................................AATCGTACAGGGTCATCCAATT.............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TCGTACAGGGTCATCCACTT.............................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TCGTACAGTGTCATCCACTTTATC.......................................................... 24 2 1 1.00 1 0 0 0 1 0 0 0
.....................................................................................................CTCGTACAGGGTCATCCACTT.............................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACAGCGTCATCCACTT.............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTAAAGGGTCATCCACTT.............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TCGTACAGGGTCATCCCCTT.............................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................CGTACAGGGTCATCCACTTT............................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGGCATCCACTTT............................................................. 23 1 1 1.00 1 0 0 1 0 0 0 0
...............................................................................................AGCGGAATCGTACAGGGTCATCCACTT.............................................................. 27 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................TGGTTATCCCTGTCCTGTTCGATC............................................................................................... 24 2 1 1.00 1 0 0 0 1 0 0 0
....................................................................................................AATCGTACAGGGTCATCCACTTTC............................................................ 24 1 1 1.00 1 0 0 0 1 0 0 0
....................................................................................................AATCGTACAGGCTCATCCACTT.............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGGCATCCACT............................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................CATCGTACAGGGTCATCCACTT.............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCACTCTC............................................................ 24 2 1 1.00 1 0 0 0 1 0 0 0
....................................................................................................AATCGTACAGGGTCACCCACTTT............................................................. 23 1 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCCCTTA............................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCACTCATC........................................................... 25 3 1 1.00 1 0 0 0 1 0 0 0
..............................................................................................CTGTATAATCGTACAGGGTCATCCACTT.............................................................. 28 3 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................ATCGTACAGGGTCATCCACTTTAA........................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................GTACAGGGTCATCCACTTT............................................................. 19 0 1 1.00 1 0 0 0 0 1 0 0
....................................................................................................AATCGTACAGGGCCATCCACT............................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCACTAA............................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATTGTACAGGGTCATCCACT............................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AACCGTACAGGGTCATCCCCTT.............................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTCCAGGGTCATCCCCTT.............................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATACACTT.............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................................TCGTACATGGTCATCCACTTT............................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................AATCGTACAGGTTCATCCACTTT............................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................AGTGGTTATCCCTGTCCTGTTCGATC............................................................................................... 26 2 1 1.00 1 0 0 0 1 0 0 0
......................................................................................................TCGTACAGGGTCATCCACTAA............................................................. 21 2 2 0.50 1 0 1 0 0 0 0 0
...............................................................AGTGGTTATCCCTTTCCTTTTCG.................................................................................................. 23 2 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................AATCGTACAGGGTCATCCTT................................................................ 20 2 3 0.33 1 1 0 0 0 0 0 0
............................................TAACCTTTGGTACTTGGAGATC...................................................................................................................... 22 2 3 0.33 1 0 0 0 1 0 0 0
.................................................................................................TCGAATCCTACAGGGCCATC................................................................... 20 2 5 0.20 1 0 0 0 1 0 0 0
.......................................................................................................CGTACAGCGTCATCCACTAAT............................................................ 21 3 7 0.14 1 0 0 1 0 0 0 0

Anti-sense strand reads

TCTGTATGGTTCAGGTGGGTTCCGTCACCGAAAGAAAAGGCACGATTGGAAACCATGAACCTCTCACCAATAGGGACAGGACAAGCAAAACGAGCACAGCTTAGCATGTCCCAGTAGGTGAAAAAGTCATAGTTCTCGCGTCTGAGACCTCGAGCTAAAGGACACAAACCTAGGGTGGAGACTG

***********************************************.(((((((((.(((((((((....((((((...(((((............)))))...))))))....))))))))).)))))))))..************************************************
Read size # Mismatch Hit Count Total Norm Total SRR116844

epididymis
....................................................................................................CTAGCATGTCCGAGTAGG.................................................................. 18 2 16 0.06 1 1

Generated: 09/01/2015 at 12:30 PM