ID:

mml-mir-450a-1

 Coordinate:

chrX:133862543-133862633 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-35.3 -35.3 -34.9
mature

  1. mml-mir-450a-1  chrX:133862595-133862616 -
  2. mml-mir-450a-2  chrX:133862766-133862787 -
star

Sense Strand Reads

CAAAAGTCTAGAGGTGGTTATCGCTGACTTGTGTCACTATAGGCAATCAAAAATGATACTAAACTGTTTTTGCGATGTGTTCCTAATATGTACTATAAATATATTGGGAACATTTTGCATGTGTAGTTTTGTATCAATATACAGATGAAACGATGGAGGAAATAAACCAAAAATCTAACAGTGGCTATCTG

****************************************************.((((((.((((((....(((((.(((((((((((((((.......))))))))))))))).)))))....)))))).))))))...**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis		 SRR116844

epididymis		 SRR116842

seminal vesicle		 SRR116840

epididymis		 SRR116841

prostate		 SRR116839

testes		 SRR116843

cortex
...................................................................TTTTGCGATGTGTTCCTAATAATC.................................................................................................... 24 3 2 7.50 15 7 8 0 0 0 0 0
...................................................................TTTTGCGATGTGTTCCTAATAT...................................................................................................... 22 0 2 7.50 15 0 0 4 6 3 1 1
...................................................................TTTTGCGATGTGTTCCTAATATATC................................................................................................... 25 2 2 7.00 14 9 5 0 0 0 0 0
...................................................................TTTTGCGATGTGTTCCTAAT........................................................................................................ 20 0 2 6.50 13 0 0 6 4 2 1 0
...................................................................TTTTGCGATGTGTTCCTAATATC..................................................................................................... 23 1 2 5.50 11 2 9 0 0 0 0 0
......................................................................................................ATTGGGAACATTTTGCATGTGTATC................................................................ 25 2 1 4.00 4 1 3 0 0 0 0 0
...................................................................TTTTGCGATGTGTTCCTAATA....................................................................................................... 21 0 2 3.50 7 0 0 2 1 1 2 1
...................................................................TTTTGCGATGTGTTCCTAATATGATC.................................................................................................. 26 2 1 3.00 3 3 0 0 0 0 0 0
...................................................................TTTTGCGATGTGTTCCTAATATTATC.................................................................................................. 26 3 1 3.00 3 3 0 0 0 0 0 0
.......................................................................................................TTGGGAACATTTTGCATGTGTATCC............................................................... 25 3 1 2.00 2 2 0 0 0 0 0 0
...................................................................TTTTGCGATGTGTTCCTAA......................................................................................................... 19 0 2 1.50 3 0 0 1 0 1 1 0
...................................................................TTTTGCGATGTGTTCCTAATATAT.................................................................................................... 24 1 2 1.00 2 2 0 0 0 0 0 0
......................................................................................................ATTGGGAACATTTTGCATGTGA................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0
......................................................................................................ATTGGGAACATTTTGCATGTGT................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0
...................................................................TTTTGCGATGTGTTCC............................................................................................................ 16 0 2 0.50 1 0 0 0 1 0 0 0
...................................................................TTTTGCGATGTGTTCCCAAT........................................................................................................ 20 1 2 0.50 1 0 0 1 0 0 0 0
...................................................................TTTTGCGATGTTTTCCTAATAT...................................................................................................... 22 1 2 0.50 1 0 0 0 0 1 0 0
...................................................................TTTTGCGATGTGTTCCTAATAA...................................................................................................... 22 1 2 0.50 1 0 0 0 1 0 0 0
......................................................................................................ATTGGGAACATTTTGCATGTGATC................................................................. 24 3 2 0.50 1 1 0 0 0 0 0 0
...................................................................TTTTGAGATGTGTTCCTAATAT...................................................................................................... 22 1 2 0.50 1 0 0 0 0 0 1 0
....................................................................TTTGCGATGTGTTCCTAAT........................................................................................................ 19 0 2 0.50 1 0 0 1 0 0 0 0
...................................................................TTTTGCGATGTGTTCCTA.......................................................................................................... 18 0 2 0.50 1 0 0 1 0 0 0 0
...................................................................TTTTGCGATGTGTTCCTAATATA..................................................................................................... 23 1 2 0.50 1 0 0 1 0 0 0 0
...................................................................TTTTGCGATGTGTTCATAATATATC................................................................................................... 25 3 3 0.33 1 0 1 0 0 0 0 0
.......................................................................................................TTGGGAACATTTTGCATGTGATC................................................................. 23 3 9 0.11 1 1 0 0 0 0 0 0

Anti-sense strand reads

GTTTTCAGATCTCCACCAATAGCGACTGAACACAGTGATATCCGTTAGTTTTTACTATGATTTGACAAAAACGCTACACAAGGATTATACATGATATTTATATAACCCTTGTAAAACGTACACATCAAAACATAGTTATATGTCTACTTTGCTACCTCCTTTATTTGGTTTTTAGATTGTCACCGATAGAC

****************************************************.((((((.((((((....(((((.(((((((((((((((.......))))))))))))))).)))))....)))))).))))))...**************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:36 PM