ID:

mml-mir-449a

 Coordinate:

chr6:53216311-53216401 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.0 -39.0 -39.0

Sense Strand Reads

GCCACTTGCTTCTGGATAAATTCTTCTTGTCAATGAAGTGCTCTGGCTACCTGTGTGTGATGAGCTGGCAGTGTATTGTTAGCTGGTTGAATATGTGAATGGCATCAGCTAACATGCAACTGCTGTCTTATTGCATATACAATGAAAATCAGAGTGTAACTGAATCTGTAATTAGTGTGTGTTTACGTGTA

**************************************************.(((((((((((((.(((((((((((.((((((((((....(((....)))..)))))))))))))).))))))).)))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116839

testes		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116843

cortex		 SRR116844

epididymis
.................................................................TGGCAGTGTATTGTTAGCTGGT........................................................................................................ 22 0 1 248.00 248 220 16 6 5 1 0
.................................................................TGGCAGTGTATTGTTAGCTGGTA....................................................................................................... 23 1 1 77.00 77 65 2 8 1 1 0
.................................................................TGGCAGTGTATTGTTAGCTGGTT....................................................................................................... 23 0 1 36.00 36 30 5 1 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTTGT........................................................................................................ 22 1 1 25.00 25 22 3 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTGGTAT...................................................................................................... 24 2 1 16.00 16 14 1 0 1 0 0
.................................................................TGGCAGTGTATTGTTAGCTGTT........................................................................................................ 22 1 1 11.00 11 10 1 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTGGTAA...................................................................................................... 24 2 1 10.00 10 8 1 1 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTGG......................................................................................................... 21 0 1 9.00 9 6 2 0 1 0 0
.................................................................TGGCAGTGTATTGTTAGCTTGTA....................................................................................................... 23 2 1 8.00 8 8 0 0 0 0 0
.................................................................TGGCAGTGTATTGTTATCTGGT........................................................................................................ 22 1 1 6.00 6 5 1 0 0 0 0
.................................................................TGGCAGTGTATTTTTAGCTGGT........................................................................................................ 22 1 1 5.00 5 5 0 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTTGTT....................................................................................................... 23 1 1 5.00 5 4 1 0 0 0 0
.........................................................................................................CAGCTAACATGCAACTGCTGTCA............................................................... 23 1 1 4.00 4 3 1 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTGGA........................................................................................................ 22 1 1 3.00 3 2 0 0 0 1 0
.................................................................TGGCAGTGTATTGTTAGCT........................................................................................................... 19 0 1 3.00 3 2 1 0 0 0 0
.................................................................TGGCAGTGTATTTTTAGCTGGTA....................................................................................................... 23 2 1 3.00 3 2 0 0 0 1 0
.................................................................TGGCCGTGTATTGTTAGCTGGT........................................................................................................ 22 1 1 3.00 3 2 1 0 0 0 0
........................................................................................................TCAGCTAACATGCAACTGCTGT................................................................. 22 0 1 2.00 2 1 1 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTGTTT....................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTGGTTA...................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0
.........................................................................................................CAGCTAACATGCAACTGCTGTCT............................................................... 23 0 1 2.00 2 2 0 0 0 0 0
........................................................................................................TCAGCTAACATGCAACTGCTGTCA............................................................... 24 1 1 2.00 2 0 2 0 0 0 0
.................................................................TGGCAGTGTATTGTTATCTGGTA....................................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTTGTAA...................................................................................................... 24 3 1 2.00 2 1 1 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTGGTATC..................................................................................................... 25 3 1 2.00 2 0 0 0 0 0 2
.................................................................TGGCAGTGTATTGTTCGCTGGT........................................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0
..............................................CTACCTGTGTGTGATGAGC.............................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTGGATGAAAC.................................................................................................. 28 3 1 1.00 1 1 0 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTGGTATA..................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0
.................................................................TGGCTGTGTATTGTTAGCTGGT........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................TAGCTGGTTGAATATGTGAATGGCATC..................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0
.................................................................TGGCACTGTATTGTTAGCTGGTA....................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGTTGGTA....................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGC............................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0
.................................................................TGGTAGTGTATTGTTAGCTGGT........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................TGGTCGTGTATTGTTAGCTGGT........................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
.................................................................TGGCAGCGTATTGTTAGCTGGTA....................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTTG......................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.................................................................TGGCAGTGTACTGTTAGCTGGTA....................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTG.......................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0
.................................................................TGGCAGTGTACTGTTAGCTGGT........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
...................................................................GCAGTGTATTGTTAGCTGGT........................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0
.................................................................TGGGAGTGTATTGTTAGCTGGT........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTGTTA....................................................................................................... 23 2 2 1.00 2 1 0 0 1 0 0
.................................................................TGGCAGTGTATTGTTAGCTGGTTT...................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
.................................................................TGGCAATGTATTGTTAGCTGGT........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................TGGCAGTGTATTTTTAGCTGG......................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.................................................................TGGTAGTGTATTGTTAGCTGGTT....................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTTGA........................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
.................................................................TGGCACTGTATTGTTAGCTGGT........................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CAGCTAACATGCAACTGCTGTC................................................................ 22 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................CAGCTAACATGCAACTGCTGTCAT.............................................................. 24 1 1 1.00 1 0 1 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTGGTTGAATAT................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0
.................................................................TGGCAGTGTATTTTTAGCTGTT........................................................................................................ 22 2 5 0.80 4 4 0 0 0 0 0
.................................................................TGGCAGTGTATTTTTAGCTGTTT....................................................................................................... 23 2 3 0.67 2 2 0 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTTGTAT...................................................................................................... 24 3 3 0.67 2 2 0 0 0 0 0
.................................................................TGGCAGTGTCTTGTTAGCTGGTT....................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0
.................................................................TGGCAATGTATTGTTAGCTGGTAT...................................................................................................... 24 3 2 0.50 1 1 0 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTGGGA....................................................................................................... 23 2 2 0.50 1 0 0 1 0 0 0
.................................................................TGGCAGTGTCTTGTTAGCTGGT........................................................................................................ 22 1 2 0.50 1 1 0 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTGTA........................................................................................................ 22 2 2 0.50 1 1 0 0 0 0 0
.................................................................TGGCAGTCTATTGTTAGCTTGT........................................................................................................ 22 2 2 0.50 1 1 0 0 0 0 0
.................................................................TGGCAGTGTACTGTTAGCTTGTA....................................................................................................... 23 3 3 0.33 1 1 0 0 0 0 0
.................................................................TGGCAGTGTACTGTTATCTGGT........................................................................................................ 22 2 4 0.25 1 1 0 0 0 0 0
.................................................................TGGCAGTGTATTGTTAGCTCTTT....................................................................................................... 23 2 4 0.25 1 0 0 0 0 1 0
.................................................................TGGCAGTGTATTTTTAGCTGGTTTT..................................................................................................... 25 3 6 0.17 1 1 0 0 0 0 0
.................................................................TGGCAGTGTATTTTTAGCTTG......................................................................................................... 21 2 11 0.09 1 0 1 0 0 0 0
.................................................................TGGCAGTGTATTTTTAGCTGTTTT...................................................................................................... 24 3 13 0.08 1 1 0 0 0 0 0

Anti-sense strand reads

CGGTGAACGAAGACCTATTTAAGAAGAACAGTTACTTCACGAGACCGATGGACACACACTACTCGACCGTCACATAACAATCGACCAACTTATACACTTACCGTAGTCGATTGTACGTTGACGACAGAATAACGTATATGTTACTTTTAGTCTCACATTGACTTAGACATTAATCACACACAAATGCACAT

**************************************************.(((((((((((((.(((((((((((.((((((((((....(((....)))..)))))))))))))).))))))).)))))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:25 PM