ID:

mml-mir-421

 Coordinate:

chrX:73878069-73878147 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-43.1 -42.7 -42.7

Sense Strand Reads

GCAAGGACAGTGCCTTACTCATCTTTGTATTCGCAGTGCCTAATCCGGTGCACATTGTAGGCCTCATTAAATGTTTGTTGAATGAAAAAATGAATCATCAACAGACATTAATTGGGCGCCTGCTCTGTGATCTCCATGGGCTCAGCTTGTCCCCGCCAGTTGCCAACAACGTCCAAGCT

***********************************..(((((....((..((((..((((((((((...((((((((((((.(((.........)))))))))))))))...)))).))))))..))))..))...)))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116845

epididymis		 SRR116844

epididymis		 SRR116839

testes
................................................................................................ATCAACAGACATTAATTGGGCG............................................................. 22 0 1 192.00 192 71 58 47 16 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCGC............................................................ 23 0 1 81.00 81 59 5 12 5 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCGT............................................................ 23 1 1 29.00 29 13 9 6 1 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCGA............................................................ 23 1 1 23.00 23 6 10 5 2 0 0 0
..........................................ATCCGGTGCACATTGTAGGC..................................................................................................................... 20 0 1 13.00 13 3 2 6 2 0 0 0
...........................................TCCGGTGCACATTGTAGGC..................................................................................................................... 19 0 1 9.00 9 1 0 4 4 0 0 0
................................................................................................ATCAACAGACATTAATTTGGCG............................................................. 22 1 1 9.00 9 2 5 0 2 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCGCT........................................................... 24 1 1 8.00 8 5 1 2 0 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCGCA........................................................... 24 1 1 8.00 8 5 2 0 1 0 0 0
....................................................................................................ACAGACATTAATTGGGCGCCTGA........................................................ 23 1 1 8.00 8 4 1 2 1 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCGATC.......................................................... 25 3 1 7.00 7 0 0 0 0 6 1 0
................................................................................................ATCAACAGACATTAATTGGGC.............................................................. 21 0 1 6.00 6 3 2 1 0 0 0 0
................................................................................................ATCAACGGACATTAATTGGGCGC............................................................ 23 1 1 6.00 6 6 0 0 0 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCA............................................................. 22 1 1 6.00 6 4 1 1 0 0 0 0
.................................................................................................TCAACAGACATTAATTGGGCG............................................................. 21 0 1 5.00 5 4 1 0 0 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCGAT........................................................... 24 2 1 5.00 5 2 2 1 0 0 0 0
................................................................................................ATCAACAGACATTAATTGGG............................................................... 20 0 1 4.00 4 2 1 1 0 0 0 0
.................................................................................................TCAACAGACATTAATTGGGCGC............................................................ 22 0 1 3.00 3 3 0 0 0 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCGCTT.......................................................... 25 1 1 3.00 3 1 0 0 2 0 0 0
................................................................................................ATCAACAGACATTAATTGGGA.............................................................. 21 1 1 3.00 3 0 0 2 1 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCGTT........................................................... 24 2 1 3.00 3 1 1 1 0 0 0 0
................................................................................................ATCAACGGACATTAATTGGGCG............................................................. 22 1 1 3.00 3 2 1 0 0 0 0 0
................................................................................................ATCAACAGACATTAATTGTGCGT............................................................ 23 2 1 3.00 3 1 1 0 1 0 0 0
................................................................................................ATCAACAGACATTAATTGTGCG............................................................. 22 1 1 3.00 3 2 0 0 1 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCGTA........................................................... 24 2 1 3.00 3 2 0 1 0 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCT............................................................. 22 1 1 3.00 3 2 0 0 1 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCGCATC......................................................... 26 2 1 2.00 2 0 0 0 0 2 0 0
................................................................................................ATCAACAGACATTAATTGGGCGTTT.......................................................... 25 2 1 2.00 2 1 0 1 0 0 0 0
...................................................................................................AACAGACATTAATTGGGCGCCTGAT....................................................... 25 1 1 2.00 2 2 0 0 0 0 0 0
................................................................................................ATCAACAGACATTGATTGGGCGC............................................................ 23 1 1 2.00 2 2 0 0 0 0 0 0
.............................................CGGTGCACATTGTAGGC..................................................................................................................... 17 0 1 2.00 2 0 1 0 1 0 0 0
..................................................................................................CAACAGACATTAATTGGGCG............................................................. 20 0 1 2.00 2 0 1 1 0 0 0 0
................................................................................................ATCAACAGACATTAATTGGTCG............................................................. 22 1 1 2.00 2 1 1 0 0 0 0 0
................................................................................................ATCAACGGACATTAATTGGGATC............................................................ 23 3 1 2.00 2 0 0 0 0 2 0 0
................................................................................................ATCAACAGACATTAATTGGGCGCAA.......................................................... 25 2 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................AACAGACATTAATTGGGCGCCTGA........................................................ 24 1 1 2.00 2 1 0 0 0 0 0 1
................................................................................................ATCAACAGACATTAATTGG................................................................ 19 0 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................AACAGACATTAATTGGGCGAATC......................................................... 23 3 2 2.00 4 0 0 0 0 3 1 0
....................................................................................................ACAGACATTAATTGGGCGCCTGT........................................................ 23 1 1 2.00 2 1 0 1 0 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCGCATT......................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCTC............................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................AACAGACATTAATTGGGCGC............................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0
................................................................................................ATCAACAGACATTAATTTGGCGC............................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TCCACAGACATTAATTGGGCG............................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................................ATCAACAGACATTAATTGTTCG............................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................ACAGACATTAATTGGGCGCCTGAT....................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TCAACAGACATTGATTGGGCGC............................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................CAACAGACATTAATTGGGCGCTTT......................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
................................................................................................ATCAACAGACATTAATTTGG............................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................................ATCAACAGACAGTAATTGGGCGC............................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................AACAGACATTACTTGGGCGCCTG......................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................ACGGACATTAATTGGGCGCCTGA........................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0
...........................................TCCGGTGCACATTGTAGGCA.................................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0
...................................................................................................AACAGACATTAATTGGGCGA............................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................CAACAGACATTAATTGGGCGT............................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................ACAGGCATTAATTGGGCGCCTG......................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCTA............................................................ 23 2 1 1.00 1 0 0 0 0 0 0 1
....................................................................................................ACAGACATTAATTGGGCGCCTT......................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................AACAGACATTACTTGGGCGCCTGA........................................................ 24 2 1 1.00 1 1 0 0 0 0 0 0
................................................................................................ATCAACAGACGTTAATTGGGCG............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................AACAGACATTAATTGGGCGACTC......................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0
................................................................................................ATCAACAGACATTAATTGGGCGAA........................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
..........................................ATCCGGTGCACATTGTAGTC..................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCGCTTT......................................................... 26 2 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................ACAGACATTAATTGGGCGCCTG......................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TCAACAGACATTAATTGGGGG............................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0
................................................................................................ATCAACAGACATTACTTGGGCGT............................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TCAACAGACATTAATTGGGCGCAT.......................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0
................................................................................................ATCAACAGACATTAATTTGGCGCA........................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCGAATC......................................................... 26 3 1 1.00 1 0 0 0 0 0 1 0
...................................................................................................AACAGACATTAATTGGGCGCCTGT........................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................CAACAGACATTAATTGGGCGCT........................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0
................................................................................................ATCAACAGACATTAATTGGGTGC............................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................................ATCAACGGACATTAATTGGGCGCT........................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCAA............................................................ 23 2 2 1.00 2 0 2 0 0 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCGCTTTT........................................................ 27 3 1 1.00 1 0 0 0 1 0 0 0
................................................................................................ATCAACAGATATTGATTGGGCG............................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TCAACAGACATTAATTGGGCGCTTT......................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................AACAGACATTAATTGGGCGCCT.......................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................AACAGACATTAATTGGGCGCCTG......................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................TCAACAGACATTAATTGGGCGCT........................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................ACAGACATTAATTGGGCGCCTGAA....................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0
................................................................................................ATCATCAGACATTAATTGGGCG............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................CAACAGACATTAATTGGGCGCCT.......................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................AACGGACATTAATTGGGCGCCT.......................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................ACAGACATTAATTGGGCGCCTGTAT...................................................... 25 3 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................ACAGACATTAATTGGGCGCCTGTAA...................................................... 25 3 3 0.67 2 0 0 0 2 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCAT............................................................ 23 2 5 0.60 3 2 0 1 0 0 0 0
...........................................TCCGGTGCACATTGTAGGCAA................................................................................................................... 21 2 2 0.50 1 0 0 0 1 0 0 0
....................................................................................................ACGGACATTAATTGGGCGCCTAA........................................................ 23 3 2 0.50 1 1 0 0 0 0 0 0
.................................................................................................TCAACAGACATTAATTGGGCA............................................................. 21 1 2 0.50 1 1 0 0 0 0 0 0
..........................................ATCCGGTGCCCCTTGTAGGC..................................................................................................................... 20 2 3 0.33 1 0 0 1 0 0 0 0
................................................................................................ATCAACAGACATTAATTGGGTC............................................................. 22 2 3 0.33 1 0 0 0 0 0 1 0
................................................................................................ATCAACAGACATTAATTGGGCATC........................................................... 24 2 3 0.33 1 0 0 0 0 1 0 0
................................................................................................ATCAACAGACATTAATTGGGCTAA........................................................... 24 3 3 0.33 1 0 1 0 0 0 0 0
....................................................................................................ACAGACATTAATTGGGCGCCAAA........................................................ 23 3 4 0.25 1 0 1 0 0 0 0 0
................................................................................................ATCAACAGACATTAATTGGGCAATT.......................................................... 25 3 7 0.14 1 0 1 0 0 0 0 0
...................................................................................................AACAGACATTAATTGGGCA............................................................. 19 1 7 0.14 1 0 0 1 0 0 0 0

Anti-sense strand reads

CGTTCCTGTCACGGAATGAGTAGAAACATAAGCGTCACGGATTAGGCCACGTGTAACATCCGGAGTAATTTACAAACAACTTACTTTTTTACTTAGTAGTTGTCTGTAATTAACCCGCGGACGAGACACTAGAGGTACCCGAGTCGAACAGGGGCGGTCAACGGTTGTTGCAGGTTCGA

***********************************..(((((....((..((((..((((((((((...((((((((((((.(((.........)))))))))))))))...)))).))))))..))))..))...)))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:34 PM