ID:

mml-mir-381

 Coordinate:

chr7:164944340-164944414 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-46.0 -46.0 -45.2

Sense Strand Reads

GGCCGGTCCTGTGAATGATAGTGAGGAACCTGCCCAGTGCTATTGTTTGGTACTTAAAGCGAGGTTGCCCTTTGTATATTCGGTTTATTGACATGGAATATACAAGGGCAAGCTCTCTGTGAGTATCAAACCTTGTCTTGGACCCAGTCCACACTCAGCAAGGGATGCGGTATGT

******************************************..((((((((((((.((.(((.((((((((.((((((((.((........)).)))))))))))))))).))).)).))))))))))))....**************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116844

epididymis		 SRR116841

prostate		 SRR116845

epididymis		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116839

testes
..................................................................................................TATACAAGGGCAAGCTCTCTGTATC.................................................... 25 3 1 133.00 133 0 87 0 46 0 0 0
..................................................................................................TATACAAGGGCAAGCTCTCTGT....................................................... 22 0 1 56.00 56 27 0 21 0 5 2 1
..................................................................................................TATGCAAGGGCAAGCTCTCTGT....................................................... 22 1 1 29.00 29 22 0 2 0 3 2 0
.........................................................AGCGAGGTTGCCCTTTGTAT.................................................................................................. 20 0 1 16.00 16 10 0 4 0 2 0 0
..................................................................................................TATACAAGGGCAAGCTCTCTGTA...................................................... 23 1 1 14.00 14 4 0 3 1 5 1 0
.........................................................AGCGAGGTTGCCCTTTGTATATT............................................................................................... 23 0 1 13.00 13 9 0 3 0 1 0 0
..................................................................................................TATACAAGGGCAAGCTCTCT......................................................... 20 0 1 10.00 10 4 0 4 0 1 1 0
.........................................................AGCGAGGTTGCCCTTTGTATAT................................................................................................ 22 0 1 9.00 9 5 0 4 0 0 0 0
.................................................................................................ATATACAAGGGCAAGCTCTCT......................................................... 21 0 1 9.00 9 4 0 1 0 2 1 1
...................................................................................................ATACAAGGGCAAGCTCTCTGT....................................................... 21 0 1 8.00 8 4 0 1 0 2 1 0
..................................................................................................TATACAAGGGCAAGCTCTCTGTT...................................................... 23 1 1 7.00 7 2 0 3 0 2 0 0
..................................................................................................TATACAAGGGCAAGCTCTCTG........................................................ 21 0 1 6.00 6 0 0 2 0 1 3 0
..................................................................................................TATACAAGGGCAAGCTCTC.......................................................... 19 0 1 5.00 5 3 0 2 0 0 0 0
...................................................................................................ATACAAGGGCAAGCTCTCTGTT...................................................... 22 1 1 5.00 5 4 0 0 0 1 0 0
.........................................................AGCGAGGTTGCCCTTTGTATA................................................................................................. 21 0 1 5.00 5 3 0 0 0 2 0 0
.................................................................................................ATATGCAAGGGCAAGCTCTCT......................................................... 21 1 1 5.00 5 3 0 0 0 1 1 0
..................................................................................................TATACAAGGGCAAGCTCTCTGA....................................................... 22 1 1 3.00 3 0 0 3 0 0 0 0
...................................................................................................ATACAAGGGCAAGCTCTCTGTTT..................................................... 23 2 1 3.00 3 1 0 2 0 0 0 0
...................................................................................................ATACAAGGGCAAGCTCTCTGTA...................................................... 22 1 1 3.00 3 1 0 2 0 0 0 0
..................................................................................................TATACAAGGGCAAGCTCTCTGTAA..................................................... 24 1 1 3.00 3 1 0 1 0 0 0 1
..................................................................................................TATGCAGGGGCAAGCTCTCTGT....................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0
...................................................................................................ATACAAGGGCAAGCTCTCTGTAA..................................................... 23 1 1 3.00 3 2 0 1 0 0 0 0
..................................................................................................TATACAAGGGCAAGCTCTCTTT....................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0
.........................................................AGCGAGGTTGCCCTTTGTAA.................................................................................................. 20 1 1 2.00 2 2 0 0 0 0 0 0
.........................................................AGCGAGGTTGCCCTTTGT.................................................................................................... 18 0 1 2.00 2 1 0 1 0 0 0 0
.................................................................................................ATATACAAGGGCAAGCTCT........................................................... 19 0 1 2.00 2 1 0 0 0 1 0 0
..................................................................................................TATACAAGGGCAAGCTCTCTGATC..................................................... 24 3 2 2.00 4 0 4 0 0 0 0 0
..................................................................................................TATACAATGGCAAGCTCTCTGT....................................................... 22 1 1 2.00 2 1 0 0 0 0 0 1
..................................................................................................TATACAAGGGCAAGCTCTCTATC...................................................... 23 2 1 2.00 2 0 2 0 0 0 0 0
..................................................................................................TATACAAGGGCAAGCTC............................................................ 17 0 1 2.00 2 0 0 2 0 0 0 0
.................................................................................................ATATACAAGGGCAAGCTCTCTGT....................................................... 23 0 1 2.00 2 1 0 0 0 1 0 0
..................................................................................................TATACAAGGGCAAGCTCT........................................................... 18 0 1 2.00 2 1 0 1 0 0 0 0
..................................................................................................TATACAAGGGCAAGCTTTCTGT....................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................TATACAGGGGCAAGCTCTCTGTA...................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................TATACAGGGGCAAGCTCTCTGTAT..................................................... 24 3 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................ATATACAAGGGCAAGCTCTCTG........................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................ATATACAAGGGCAAGCTCTCTTTAA..................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................TATGCACGGGCAAGCTCTCTGT....................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................TATACATGGGCAAGCTCTCT......................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................GGCGAGGTTGCCCTTTGTATATA............................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................ATACAAGGGTAAGCTCTCTGTT...................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................ATACAAGGGCAAGCTCTCTAT....................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
.........................................................AGCGAGGTTGCCCTTTGTT................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................AGCGAGGTTGCCCTTTGTATATTC.............................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................TGTACAAGGGCAAGCTCTCT......................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................TATACAAGGGCTAGCTCTCTG........................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................AGCGAGGTTGCCCTTTGTAGAATC.............................................................................................. 24 2 1 1.00 1 0 0 0 1 0 0 0
..............................................................................................GGAATATACAAGGGCAAGCTCT........................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................TATGCAGGGGCAAGCTCTCTGTAA..................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................TATACAAGGGCAATCTCTCTGTAACT................................................... 26 3 1 1.00 1 0 0 0 0 0 1 0
..................................................................................................TATACAAGGGCAAGCTCTCTGTAT..................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0
.........................................................AGCGATGTTGCCCTTTGTATATT............................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................ATATGCAAGGGCAAGCTCTCTG........................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................TATACAGGGGCAAGCTCTCTGT....................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................TATACAAGGGCAAGCTCTCA......................................................... 20 1 1 1.00 1 0 0 0 0 0 1 0
..................................................................................................TATGCAAGGGCAAGCTCTCT......................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................AGCGAGGTTGCCCTTTGTATATA............................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................TATACAAGGGCAAGCTCTCAATC...................................................... 23 3 3 0.67 2 0 2 0 0 0 0 0
...................................................................................................ATACAAGGGCATGCTCTCTGTT...................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................TATGCAAGGGCAAGCTCTCTTT....................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................TATACAAGGGCAAGCTCA........................................................... 18 1 2 0.50 1 0 0 0 0 0 1 0
..................................................................................................TATGCAAGGGCAAGCTCTCTGA....................................................... 22 2 2 0.50 1 0 0 0 0 1 0 0
..................................................................................................TATACAAGGGCAAGCTCTCTTA....................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................TACAAGGGCAAGCTCTCTGTAT..................................................... 22 2 3 0.33 1 0 0 1 0 0 0 0
..................................................................................................TATGCAAGGGCAAGCTTTCTGT....................................................... 22 2 4 0.25 1 1 0 0 0 0 0 0
..................................................................................................TATACAAGGGCAAGCTCTGTATC...................................................... 23 3 4 0.25 1 0 1 0 0 0 0 0
..................................................................................................TATGCAGGGGCAAGCTCTCTGTA...................................................... 23 3 4 0.25 1 0 0 0 0 1 0 0
..................................................................................................CATGCAAGGGCAAGCTCTCTGTA...................................................... 23 3 4 0.25 1 0 0 1 0 0 0 0
..................................................................................................TATACAAGGGCAAGCTCAT.......................................................... 19 2 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

CCGGCCAGGACACTTACTATCACTCCTTGGACGGGTCACGATAACAAACCATGAATTTCGCTCCAACGGGAAACATATAAGCCAAATAACTGTACCTTATATGTTCCCGTTCGAGAGACACTCATAGTTTGGAACAGAACCTGGGTCAGGTGTGAGTCGTTCCCTACGCCATACA

****************************************..((((((((((((.((.(((.((((((((.((((((((.((........)).)))))))))))))))).))).)).))))))))))))....****************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:30 PM