ID:

mml-mir-380

 Coordinate:

chr7:164924780-164924840 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

AGAGGAAAGAGACACCGGCTCTAACATCAGCCCTCTCCAAGGTACCTGAAAAGATGGTTGACCATAGAACATGCGCTATCTCTGTGTCGTATGTAATATGGTCCACGTCTTCTCAATATCAAATTCAGTCACAGAGGGCTTCCCAGAGACAGGCAAAGTCA

**************************************..((((..(((.((((((...(((((((..(((((((.(((....))).)))))))..)))))))..)))))).))).)))).....************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116841

prostate		 SRR116840

epididymis		 SRR116844

epididymis		 SRR116845

epididymis
.........................................................................................TATGTAATATGGTCCACGTCT................................................... 21 0 1 36.00 36 29 4 3 0 0
.....................................................ATGGTTGACCATAGAACATGCG...................................................................................... 22 0 1 9.00 9 8 1 0 0 0
.....................................................ATGGTTGACCATAGAACATGC....................................................................................... 21 0 1 6.00 6 4 2 0 0 0
.........................................................................................TATGTAATATTGTCCACGTCT................................................... 21 1 1 3.00 3 3 0 0 0 0
.........................................................................................TATGTAATATGGTCCACGTC.................................................... 20 0 1 2.00 2 2 0 0 0 0
.........................................................................................TATGTAATATGGTCCACGTCTATC................................................ 24 3 3 1.33 4 0 0 0 2 2
.....................................................ATGGTTGACCATAGAACATGCAA..................................................................................... 23 2 1 1.00 1 1 0 0 0 0
.....................................................ATGGTTGACCATAGAACATGCGA..................................................................................... 23 1 1 1.00 1 1 0 0 0 0
.........................................................................................TATGTAATATGGTCCACGTTT................................................... 21 1 1 1.00 1 1 0 0 0 0
.........................................................................................TATGTAATATGGTCCACGTCATC................................................. 23 1 1 1.00 1 0 0 0 1 0
......................................................TGGTTGACCATAGAACATGCGA..................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.........................................................................................TATGTAATATGGTCCACG...................................................... 18 0 1 1.00 1 1 0 0 0 0
.........................................................................................TATGTCATGTGGTCCACGTCT................................................... 21 2 1 1.00 1 0 0 1 0 0
.........................................................................................TATGTAATATTTTCCACGTCT................................................... 21 2 8 0.25 2 1 1 0 0 0

Anti-sense strand reads

TCTCCTTTCTCTGTGGCCGAGATTGTAGTCGGGAGAGGTTCCATGGACTTTTCTACCAACTGGTATCTTGTACGCGATAGAGACACAGCATACATTATACCAGGTGCAGAAGAGTTATAGTTTAAGTCAGTGTCTCCCGAAGGGTCTCTGTCCGTTTCAGT

************************************..((((..(((.((((((...(((((((..(((((((.(((....))).)))))))..)))))))..)))))).))).)))).....************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:28 PM