ID:

mml-mir-378j

 Coordinate:

chr16:49625637-49625745 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Sense Strand Reads

AATCCTTGTTGCTTAGTGGACCTCACTTCAGGCACCACAAACTTGGCCCCATGCAGTGAGTGGGGGAGGAACTGGATTTGGAGCCAGAAGAACTGGTTCTAATATCTACTTCCCTGTGTAGAGTTGGGATTTGGGATTATATGAGTTAGTACACACCAAAGAACTTTGTATTACTATAATAATAGTTTGCAAACATTGATTATTTTCTC

***********************************.((((((((((((((((.......))))))..((((.(((((((((((((((.....)))))))))).))))).)))).((((((.......((((((........))))))..)))))))).)))...))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116840

epididymis
......................................................................ACTGGACTTGGAGCCAGAAGGA..................................................................................................................... 22 2 13 0.85 11 4 5 2
......................................................................ACTGGATTTGGAGTCAGAAGGA..................................................................................................................... 22 2 16 0.69 11 6 5 0
......................................................................ACTGGACTTGGAGCCAGAAGTA..................................................................................................................... 22 2 6 0.17 1 1 0 0
......................................................................ACTGGACTTGGAGTCAGAAGAACGG.................................................................................................................. 25 3 17 0.06 1 1 0 0
.......................................................................CTGGATTTGGAGTCAGAAGGA..................................................................................................................... 21 2 20 0.05 1 1 0 0

Anti-sense strand reads

TTAGGAACAACGAATCACCTGGAGTGAAGTCCGTGGTGTTTGAACCGGGGTACGTCACTCACCCCCTCCTTGACCTAAACCTCGGTCTTCTTGACCAAGATTATAGATGAAGGGACACATCTCAACCCTAAACCCTAATATACTCAATCATGTGTGGTTTCTTGAAACATAATGATATTATTATCAAACGTTTGTAACTAATAAAAGAG

***********************************.((((((((((((((((.......))))))..((((.(((((((((((((((.....)))))))))).))))).)))).((((((.......((((((........))))))..)))))))).)))...))))).....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:13 PM