ID:

mml-mir-378d

 Coordinate:

chr5:3095362-3095473 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.4 -41.9 -41.8
mature

  1. chr18:19252292-19252311 +
  2. chr2:176865093-176865112 -
  3. mml-mir-378d  chr5:3095432-3095451 +
  4. mml-mir-378a  chr6:147808924-147808943 +
  5. chr7:117671975-117671994 -
  6. chr8:98800167-98800186 -
  7. chrX:138342374-138342393 +
star

Sense Strand Reads

CCTTGTTAGCAATGAACACAATTAGTAGCACACGTGAGGTACCAGGCTCTGCACTTGGCCCAGAGTTCACACTCAGGGCTCATTGCTGCCATTGTTTCTGTCTTCGTTCCTGTTGTTATTACTGGACTTGGAGTCAGAAGCAGGTTCGAATCCCAACTCCACCATCCTTTAGCTGCAGTCCTTGGGCCACATTTGTAACCTCCCTGAATATC

***********************************((((.....(((...(((...(((((.((((....)))).)))))...))).)))..((((((((.(((((.(((.((.......)).)))..))))).))))))))(((..((........)).)))..))))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116840

epididymis		 SRR116843

cortex		 SRR116839

testes		 SRR116844

epididymis		 SRR116845

epididymis
........................................................................................................................ACTGGACTTGGAGTCAGAAGGA...................................................................... 22 1 3 6222.00 18666 9725 5866 2349 654 70 1 1
........................................................................................................................ACTGGACTTGGAGTCAGAAG........................................................................ 20 0 7 1627.14 11390 5061 3925 1934 432 38 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAA..................................................................... 23 2 5 536.60 2683 1287 868 359 155 14 0 0
........................................................................................................................ACTGGACTTGGAGTCAGA.......................................................................... 18 0 13 117.00 1521 663 544 262 47 5 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAG..................................................................... 23 1 1 100.00 100 61 20 16 3 0 0 0
.........................................................................................................................CTGGACTTGGAGTCAGAAGGA...................................................................... 21 1 6 84.00 504 275 151 57 20 1 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGTA...................................................................... 22 1 2 77.50 155 95 34 18 7 1 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAA......................................................................... 19 0 10 65.30 653 340 204 85 22 2 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAT..................................................................... 23 2 7 57.43 402 211 101 72 12 5 1 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGAA...................................................................... 22 1 5 44.00 220 110 64 35 11 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAAA.................................................................... 24 3 15 27.93 419 188 150 63 17 1 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGATC.................................................................... 24 3 17 20.82 354 1 0 0 0 0 259 94
.........................................................................................................................CTGGACTTGGAGTCAGAAGGAA..................................................................... 22 2 12 18.00 216 117 52 37 9 1 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGC....................................................................... 21 0 1 16.00 16 6 7 3 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTTAGAAGGA...................................................................... 22 2 10 10.80 108 41 58 6 3 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAGA.................................................................... 24 2 2 9.50 19 6 8 5 0 0 0 0
........................................................................................................................ACTGGACTTGTAGTCAGAAGGA...................................................................... 22 2 4 9.25 37 3 20 12 2 0 0 0
.........................................................................................................................CTGGACTTGGAGTCAGAAG........................................................................ 19 0 12 9.08 109 58 29 16 5 1 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGTAA..................................................................... 23 2 3 9.00 27 14 7 3 2 1 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGCA...................................................................... 22 0 1 8.00 8 1 3 2 2 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAAG.................................................................... 24 2 1 8.00 8 4 0 3 1 0 0 0
........................................................................................................................ACTGGACTTGGCGTCAGAAGGA...................................................................... 22 2 3 6.33 19 11 3 1 3 1 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGTG..................................................................... 23 2 13 6.08 79 62 8 7 2 0 0 0
........................................................................................................................ACTGGACTTGGAGTCGGAAGGA...................................................................... 22 2 4 5.75 23 14 4 3 1 1 0 0
........................................................................................................................ACTGGACTTGGGGTCAGAAGGA...................................................................... 22 2 5 5.00 25 14 6 4 1 0 0 0
.......................................................................................................................GACTGGACTTGGAGTCAGAAG........................................................................ 21 1 13 4.92 64 28 26 8 2 0 0 0
........................................................................................................................ACTGGACTTTGAGTCAGAAG........................................................................ 20 1 7 4.71 33 3 20 9 1 0 0 0
........................................................................................................................ACTGGACTTGGAGTCCGAAGGA...................................................................... 22 2 3 4.67 14 11 1 2 0 0 0 0
........................................................................................................................ACTGGACTTGGATTCAGAAGGA...................................................................... 22 2 7 4.00 28 9 9 5 5 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAGT.................................................................... 24 2 3 3.67 11 4 3 2 1 1 0 0
........................................................................................................................ACTGGACTTGTAGTCAGAAG........................................................................ 20 1 9 3.22 29 1 19 7 1 1 0 0
........................................................................................................................ACTGGACTTGGAGTCATAAGGA...................................................................... 22 2 6 3.17 19 1 12 5 1 0 0 0
........................................................................................................................ACTGGACTTTGAGTCAGAAGGA...................................................................... 22 2 6 3.17 19 2 12 5 0 0 0 0
........................................................................................................................ACTGGGCTTGGAGTCAGAAGGA...................................................................... 22 2 12 3.08 37 17 16 1 3 0 0 0
........................................................................................................................ACTGGACTTGGAGGCAGAAG........................................................................ 20 1 12 3.00 36 22 9 4 1 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGCAGGA...................................................................... 22 2 7 2.86 20 10 4 4 2 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAG........................................................................... 17 0 18 2.61 47 22 22 1 2 0 0 0
.........................................................................................................................CTGGACTTGGAGTCAGAAGGAG..................................................................... 22 1 2 2.50 5 3 1 0 1 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAGG........................................................................ 20 1 12 2.33 28 14 13 1 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCGGAAG........................................................................ 20 1 9 2.22 20 11 8 1 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCACAAGGA...................................................................... 22 2 5 2.20 11 6 2 2 0 1 0 0
........................................................................................................................ACTGGACTTGGCGTCAGAAG........................................................................ 20 1 8 2.13 17 5 5 4 3 0 0 0
........................................................................................................................ACTGGACTTGGATTCAGAAG........................................................................ 20 1 12 2.00 24 7 8 5 4 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAGGCA.................................................................. 26 3 1 2.00 2 1 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGACGATC................................................................. 27 3 1 2.00 2 1 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAGATC.................................................................. 26 3 2 2.00 4 0 0 0 0 0 2 2
........................................................................................................................ACTGGACTTGGAGTCAGAAGGCAGTT.................................................................. 26 3 3 2.00 6 3 0 3 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGCG...................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0
........................................................................................................................ACTGGACTTGGTGTCAGAAGGA...................................................................... 22 2 5 1.80 9 2 3 2 2 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGCAG........................................................................ 20 1 15 1.80 27 18 3 4 2 0 0 0
........................................................................................................................ACTGTACTTGGAGTCAGAAGGA...................................................................... 22 2 4 1.75 7 4 2 0 1 0 0 0
........................................................................................................................ACCGGACTTGGAGTCAGAAGGA...................................................................... 22 2 4 1.75 7 6 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAAAT................................................................... 25 3 4 1.50 6 1 3 2 0 0 0 0
........................................................................................................................ACTGGACTTGGGGTCAGAAG........................................................................ 20 1 13 1.46 19 12 4 2 1 0 0 0
........................................................................................................................ACTGGACTTGGAGTCTGAAGGA...................................................................... 22 2 8 1.38 11 6 5 0 0 0 0 0
.........................................................................................................................CTGGACTTGGAGTCAGAAGAA...................................................................... 21 1 8 1.38 11 5 3 3 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGAAA..................................................................... 23 2 11 1.36 15 7 6 2 0 0 0 0
........................................................................................................................ACTGGACTCGGAGTCAGAAGGA...................................................................... 22 2 7 1.29 9 7 0 2 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGTAGGA...................................................................... 22 2 4 1.25 5 2 3 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTGAGAAGGA...................................................................... 22 2 5 1.20 6 3 3 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAGGGA...................................................................... 22 2 7 1.14 8 6 1 0 1 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGAAGGC................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAACGA...................................................................... 22 2 8 1.00 8 5 2 1 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAAGT................................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................TATTACTGGACTTGGAGTCAGAAGC....................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAGCT................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCATAAG........................................................................ 20 1 12 1.00 12 1 6 3 1 1 0 0
........................................................................................................................ACTGGACTTGGAGTCCGAAGGAG..................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGCGGTT................................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAGGCTCC................................................................ 28 3 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTCGAGTCAGAAGGA...................................................................... 22 2 3 1.00 3 2 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGTGTCAGAAGCAT..................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................ACTCGACTTGGAGTCAGAAGCAGGTT.................................................................. 26 1 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGTGG.................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAGCTA.................................................................. 26 3 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAGGCA...................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGTAG..................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGCGGTT.................................................................. 26 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAGGC................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAAGATC................................................................. 27 3 1 1.00 1 0 0 0 0 0 1 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGTAT..................................................................... 23 2 4 1.00 4 3 0 1 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTTAGAAGCA...................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................CTGGACTTGGAGTCAGAAGGAT..................................................................... 22 2 15 1.00 15 9 4 1 1 0 0 0
........................................................................................................................ACTGGACTTAGAGTCAGAAGGAG..................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................ACTTGACTTGGAGTCAGAAGGA...................................................................... 22 2 6 1.00 6 5 0 1 0 0 0 0
.........................................................................................................................CTGGACTTGGAGTCAGAAGCA...................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGCGGTTC................................................................. 27 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................ACGGGACTTGGAGTCAGAAGGA...................................................................... 22 2 3 1.00 3 3 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAGTAT.................................................................. 26 3 2 1.00 2 0 2 0 0 0 0 0
........................................................................................................................ACTCGACTTGGAGTCAGAAGGAG..................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAGGA................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGACG........................................................................ 20 1 10 0.90 9 3 5 1 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCCGAAG........................................................................ 20 1 10 0.90 9 7 0 1 1 0 0 0
........................................................................................................................ACTGGACTTGGAGCCAGAAGGA...................................................................... 22 2 13 0.85 11 4 5 2 0 0 0 0
.......................................................................................................................AACTGGACTTGGAGTCAGAAGGA...................................................................... 23 2 6 0.83 5 3 0 2 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAATC....................................................................... 21 1 5 0.80 4 0 0 0 0 0 1 3
........................................................................................................................ACTGGACTTGGACTCAGAAGGA...................................................................... 22 2 8 0.75 6 5 0 0 1 0 0 0
........................................................................................................................ACTGGATTTGGAGTCAGAAGGA...................................................................... 22 2 16 0.69 11 6 5 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAAATT.................................................................. 26 3 3 0.67 2 1 0 0 0 0 1 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGACG.................................................................... 24 2 3 0.67 2 1 1 0 0 0 0 0
.........................................................................................................................CTGGACTTGGAGTCAGAAGGAAG.................................................................... 23 2 3 0.67 2 1 1 0 0 0 0 0
..........................................................................................................................TGGACTTGGAGTCAGAAGGA...................................................................... 20 1 13 0.62 8 7 1 0 0 0 0 0
........................................................................................................................ACTGGACTTAGAGTCAGAAGGA...................................................................... 22 2 5 0.60 3 2 0 1 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGTAG........................................................................ 20 1 10 0.60 6 5 0 0 1 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGGG..................................................................... 23 2 7 0.57 4 2 2 0 0 0 0 0
........................................................................................................................CCTGGACTTGGAGTCAGAAGGA...................................................................... 22 2 15 0.53 8 8 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGCGGT................................................................... 25 2 2 0.50 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGAATTGGAGTCAGAAGGA...................................................................... 22 2 10 0.50 5 1 3 1 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGCTGTT.................................................................. 26 3 2 0.50 1 0 0 0 1 0 0 0
........................................................................................................................ACTGGACTCGGAGTCAGAAGTAG..................................................................... 23 2 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGCGAAT................................................................... 25 3 2 0.50 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAAGA................................................................... 25 3 4 0.50 2 1 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGATGC................................................................... 25 3 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGCT...................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGTGGAT.................................................................. 26 3 2 0.50 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGGAGGA...................................................................... 22 2 12 0.50 6 3 2 0 1 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGTACG.................................................................... 24 2 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGCCG..................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGAAG..................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGATAT................................................................... 25 3 4 0.50 2 2 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGACAGAAGGA...................................................................... 22 2 10 0.50 5 2 3 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGTAGGAC.................................................................. 26 3 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGATGCA...................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAAGG................................................................... 25 3 4 0.50 2 1 0 1 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAAGTG.................................................................. 26 3 2 0.50 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACCTGGAGTCAGAAGGA...................................................................... 22 2 10 0.50 5 3 2 0 0 0 0 0
........................................................................................................................ACTGGACTTGTAGTCAGAAGGAA..................................................................... 23 3 15 0.47 7 1 5 1 0 0 0 0
........................................................................................................................ACTGGACTTGGCGTCAGAAGGAA..................................................................... 23 3 7 0.43 3 1 1 0 1 0 0 0
........................................................................................................................ACTGGACTTGGAGTCGGA.......................................................................... 18 1 19 0.42 8 0 7 0 1 0 0 0
........................................................................................................................ACTTGACTTGGAGTCAGAAG........................................................................ 20 1 12 0.42 5 1 4 0 0 0 0 0
........................................................................................................................ACTGGAATTGGAGTCAGAAG........................................................................ 20 1 16 0.38 6 3 2 1 0 0 0 0
........................................................................................................................ACTGGACTTGGAGACAGAAG........................................................................ 20 1 8 0.38 3 1 1 0 1 0 0 0
........................................................................................................................ACTGGACTTGGAGTCGGAAGGAA..................................................................... 23 3 11 0.36 4 0 1 0 3 0 0 0
.........................................................................................................................CTGGACTTGGAGTCAGA.......................................................................... 17 0 20 0.35 7 4 2 1 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCA............................................................................ 16 0 20 0.35 7 2 4 1 0 0 0 0
........................................................................................................................ACCGGACTTGGAGTCAGCAGC....................................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGCGTCAGAAGTA...................................................................... 22 2 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAACT................................................................... 25 3 6 0.33 2 2 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGTGGC................................................................... 25 3 6 0.33 2 2 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGATTCAGAAGTA...................................................................... 22 2 3 0.33 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGATGC....................................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTTGAGTCAGAAGTA...................................................................... 22 2 3 0.33 1 0 1 0 0 0 0 0
........................................................................................................................ACTGCACTTGGAGTCAGAAGGA...................................................................... 22 2 3 0.33 1 0 0 1 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTTAGAAGTA...................................................................... 22 2 3 0.33 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAGAAT.................................................................. 26 3 3 0.33 1 0 1 0 0 0 0 0
........................................................................................................................ATTGGACTTGGAGTCAGAAGGA...................................................................... 22 2 15 0.33 5 1 2 2 0 0 0 0
........................................................................................................................ACTGGACGTGGAGTCAGAAGGA...................................................................... 22 2 6 0.33 2 2 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGCAGGAG..................................................................... 23 2 3 0.33 1 1 0 0 0 0 0 0
.........................................................................................................................CTGGACTTGGAGTCAGAAGGAGATA.................................................................. 25 3 3 0.33 1 0 0 1 0 0 0 0
........................................................................................................................ACCGGACTTGGAGTCAGAAG........................................................................ 20 1 9 0.33 3 0 2 1 0 0 0 0
........................................................................................................................ACTGGACCTGGAGTCAGAAG........................................................................ 20 1 16 0.31 5 1 2 1 1 0 0 0
.........................................................................................................................CTGGACTTGGAGTCAGAAGTAA..................................................................... 22 2 7 0.29 2 1 1 0 0 0 0 0
........................................................................................................................AGTGGACTTGGAGTCAGAAGGA...................................................................... 22 2 11 0.27 3 1 2 0 0 0 0 0
........................................................................................................................ACTGTACTTGGAGTCAGAAG........................................................................ 20 1 11 0.27 3 1 2 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCGGAA......................................................................... 19 1 12 0.25 3 1 1 0 1 0 0 0
........................................................................................................................ACTGGTCTTGGAGTCAGAAG........................................................................ 20 1 20 0.25 5 3 1 1 0 0 0 0
.........................................................................................................................CTGGACTTGGAGTCAGAAGGCGATT.................................................................. 25 3 4 0.25 1 0 1 0 0 0 0 0
.........................................................................................................................CTGGACTTGGAGTCAGAA......................................................................... 18 0 16 0.25 4 3 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGTA......................................................................... 19 1 16 0.25 4 3 0 1 0 0 0 0
.........................................................................................................................CTGGACTTGGAGTCAGAAGTA...................................................................... 21 1 4 0.25 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGACGGT.................................................................. 26 3 4 0.25 1 0 0 0 1 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAACAT..................................................................... 23 2 4 0.25 1 1 0 0 0 0 0 0
........................................................................................................................ACTGTACTTGGAGTCAGAAGTA...................................................................... 22 2 4 0.25 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGACTTCGAGTCAGAAG........................................................................ 20 1 9 0.22 2 0 2 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGATGGA...................................................................... 22 2 9 0.22 2 0 1 1 0 0 0 0
.........................................................................................................................CTGGACTTGTAGTCAGAAGGA...................................................................... 21 2 9 0.22 2 0 2 0 0 0 0 0
........................................................................................................................ACTGGACTTTGAGTCAGAAGGAA..................................................................... 23 3 18 0.22 4 1 3 0 0 0 0 0
........................................................................................................................AGTGGACTTGGAGTCAGAAG........................................................................ 20 1 15 0.20 3 0 3 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAATTT.................................................................. 26 3 5 0.20 1 0 1 0 0 0 0 0
.........................................................................................................................CTGGACTTGGAGTCAGAAGGACG.................................................................... 23 2 5 0.20 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGCGG.................................................................... 24 2 5 0.20 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGGGCT................................................................... 25 3 5 0.20 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGCAAAA................................................................... 25 3 5 0.20 1 0 0 0 1 0 0 0
........................................................................................................................ACTGGACTTGGATTCAGA.......................................................................... 18 1 20 0.20 4 0 3 1 0 0 0 0
........................................................................................................................ACTGGACATGGAGTCAGAAG........................................................................ 20 1 11 0.18 2 2 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGCACT.................................................................... 24 2 6 0.17 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGCGC..................................................................... 23 2 6 0.17 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGAGTA................................................................... 25 3 6 0.17 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGATGCATC.................................................................... 24 3 6 0.17 1 0 0 0 0 0 0 1
........................................................................................................................ACTGGACTTCGAGTCAGAA......................................................................... 19 1 12 0.17 2 0 0 2 0 0 0 0
.........................................................................................................................CTGGACTCGGAGTCAGAAGGA...................................................................... 21 2 12 0.17 2 2 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAATTA...................................................................... 22 2 6 0.17 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGCCAGAAGTA...................................................................... 22 2 6 0.17 1 1 0 0 0 0 0 0
.........................................................................................................................CTGGACTTGGAGTTAGAAGGA...................................................................... 21 2 19 0.16 3 1 2 0 0 0 0 0
........................................................................................................................ACTGGACTCGGAGTCAGAAGGAA..................................................................... 23 3 13 0.15 2 1 1 0 0 0 0 0
.......................................................................................................................AACTGGACTTGGAGTCAGAAG........................................................................ 21 1 13 0.15 2 0 1 0 1 0 0 0
.......................................................................................................................TACTGGACTTGGAGTCAGAAGG....................................................................... 22 1 7 0.14 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGCGTCAGAAGAA...................................................................... 22 2 7 0.14 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGCCAGAAGGAGA.................................................................... 24 3 7 0.14 1 0 0 0 1 0 0 0
......................................................................................................................GTACTGGACTTGGAGTCAGAAG........................................................................ 22 1 7 0.14 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGTCTTGGAGTCAGAAGGA...................................................................... 22 2 7 0.14 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTTGAGTCAGAAGAA...................................................................... 22 2 8 0.13 1 0 0 1 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGCGAA.................................................................... 24 3 8 0.13 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGGGTCAGAAGGAA..................................................................... 23 3 17 0.12 2 0 2 0 0 0 0 0
........................................................................................................................ACTGGACTTGGCGTCAGACG........................................................................ 20 2 17 0.12 2 0 1 1 0 0 0 0
........................................................................................................................ACTGGACTTAGAGTCAGAAGGAA..................................................................... 23 3 17 0.12 2 0 2 0 0 0 0 0
........................................................................................................................ACGGGACTTGGAGTCAGAAG........................................................................ 20 1 9 0.11 1 1 0 0 0 0 0 0
.........................................................................................................................CTGGACTTCGAGTCAGAAGGA...................................................................... 21 2 9 0.11 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCCGAAGGAA..................................................................... 23 3 9 0.11 1 1 0 0 0 0 0 0
........................................................................................................................GCTGGACTTGGAGTCAGAAGTA...................................................................... 22 2 9 0.11 1 1 0 0 0 0 0 0
.........................................................................................................................CTGGACTTGGAGTCAGAAGAAA..................................................................... 22 2 19 0.11 2 1 0 1 0 0 0 0
........................................................................................................................ACTGGACTTGGCGTCAGA.......................................................................... 18 1 19 0.11 2 1 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGACAGA.......................................................................... 18 1 20 0.10 2 2 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTAAGAAG........................................................................ 20 1 10 0.10 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCATA.......................................................................... 18 1 20 0.10 2 1 0 1 0 0 0 0
........................................................................................................................ACTGGACTTGTAGTCAGA.......................................................................... 18 1 20 0.10 2 0 1 1 0 0 0 0
........................................................................................................................ACTGGACTAGGAGTCAGAAGGA...................................................................... 22 2 10 0.10 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCATAA......................................................................... 19 1 20 0.10 2 0 1 1 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGTTG.................................................................... 24 3 20 0.10 2 2 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAATCAGAAG........................................................................ 20 1 20 0.10 2 2 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCACAAG........................................................................ 20 1 11 0.09 1 1 0 0 0 0 0 0
..............................................................................................................................................GGTTCGAATCCCACCCCCGCCATC.............................................. 24 3 11 0.09 1 0 0 0 0 0 1 0
........................................................................................................................ACTGGACTTGGAGTCAGAGGAA...................................................................... 22 2 11 0.09 1 0 0 1 0 0 0 0
........................................................................................................................ACTGGACTTGCAGTCAGAAG........................................................................ 20 1 11 0.09 1 1 0 0 0 0 0 0
.........................................................................................................................CTGGACTTGGAGTCATAAGGA...................................................................... 21 2 13 0.08 1 0 0 0 1 0 0 0
........................................................................................................................ACAGGACTTGGAGTCAGAAGGA...................................................................... 22 2 13 0.08 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCATAAGGAA..................................................................... 23 3 13 0.08 1 0 0 0 1 0 0 0
.........................................................................................................................CTGGACTTGGAGTCAGAAGGAAGA................................................................... 24 3 14 0.07 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGTAGTCAGAA......................................................................... 19 1 14 0.07 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGACGTGGAGTCAGAAGGAA..................................................................... 23 3 14 0.07 1 1 0 0 0 0 0 0
........................................................................................................................ACTGAACTTGGAGTCAGAAGGA...................................................................... 22 2 14 0.07 1 0 0 1 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTTAGAATC....................................................................... 21 2 14 0.07 1 0 0 0 0 0 1 0
........................................................................................................................ACTGGACTTTGAGTCCGAAGTA...................................................................... 22 3 14 0.07 1 0 0 1 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGGGGA.................................................................... 24 3 14 0.07 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTCGTAGTCAGAAGGA...................................................................... 22 3 14 0.07 1 0 0 1 0 0 0 0
........................................................................................................................ACTGGACTTGGCGTCAGAA......................................................................... 19 1 14 0.07 1 1 0 0 0 0 0 0
.........................................................................................................................CTGGACTTGGTGTCAGAAGGA...................................................................... 21 2 15 0.07 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCCGACG........................................................................ 20 2 15 0.07 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCATAAGGAT..................................................................... 23 3 16 0.06 1 0 1 0 0 0 0 0
.........................................................................................................................CTGGACTTGGATTCAGAAGGA...................................................................... 21 2 16 0.06 1 0 0 1 0 0 0 0
.........................................................................................................................CCGGACTTGGAGTCAGAAG........................................................................ 19 1 16 0.06 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGCCCGA................................................................... 25 3 16 0.06 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGACTTAGAGTCAGAAG........................................................................ 20 1 16 0.06 1 1 0 0 0 0 0 0
.........................................................................................................................CTGGACTTGGGGTCAGAAGGA...................................................................... 21 2 16 0.06 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGTAGGAA..................................................................... 23 3 17 0.06 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTCGAGTCAGA.......................................................................... 18 1 17 0.06 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCAGAAGAACGG................................................................... 25 3 17 0.06 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCACAAGGAA..................................................................... 23 3 19 0.05 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCGAAGGCA...................................................................... 22 3 19 0.05 1 0 0 0 1 0 0 0
........................................................................................................................ACTGGACTTGGCGTCAGCAGGA...................................................................... 22 3 19 0.05 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGGCAGAA......................................................................... 19 1 19 0.05 1 1 0 0 0 0 0 0
........................................................................................................................ACTGCACTTGGAGTCAGAA......................................................................... 19 1 19 0.05 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGTAGACAGAAG........................................................................ 20 2 20 0.05 1 0 1 0 0 0 0 0
........................................................................................................................ACTGTACTTGGAGGCAGAAG........................................................................ 20 2 20 0.05 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCCGA.......................................................................... 18 1 20 0.05 1 1 0 0 0 0 0 0
..........................................................................................................................TGGACTTGGAGTCAGAAG........................................................................ 18 0 20 0.05 1 0 1 0 0 0 0 0
...........................................................................................................................GGACTTGGAGTCAGAAGGA...................................................................... 19 1 20 0.05 1 0 1 0 0 0 0 0
...........................................................................................................................GGACTTGGAGTCAGAAG........................................................................ 17 0 20 0.05 1 1 0 0 0 0 0 0
..........................................................................................................................TGGACTTGGAGTCAGA.......................................................................... 16 0 20 0.05 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTTATAAGTA...................................................................... 22 3 20 0.05 1 0 1 0 0 0 0 0
.......................................................................................................................GACTGGACTTGGAGTCAGCAG........................................................................ 21 2 20 0.05 1 0 1 0 0 0 0 0
.......................................................................................................................GACTGGACTTGGGGTCAGAAG........................................................................ 21 2 20 0.05 1 1 0 0 0 0 0 0
.........................................................................................................................GTGGACTTGGAGTCAGAAG........................................................................ 19 1 20 0.05 1 0 0 1 0 0 0 0
........................................................................................................................ACTGGACTTGGAGTCCGCAG........................................................................ 20 2 20 0.05 1 0 0 0 1 0 0 0
.........................................................................................................................CTGGATTTGGAGTCAGAAGGA...................................................................... 21 2 20 0.05 1 1 0 0 0 0 0 0
.........................................................................................................................GTGGACTTGGAGTCAGAAGGA...................................................................... 21 2 20 0.05 1 1 0 0 0 0 0 0
........................................................................................................................ACTGGACTTGTAGTCATAAGGA...................................................................... 22 3 20 0.05 1 0 1 0 0 0 0 0
........................................................................................................................ACTGGACTTGGCGTCAGCAG........................................................................ 20 2 20 0.05 1 1 0 0 0 0 0 0
.........................................................................................................................CTGGGCTTGGAGTCAGAAGGA...................................................................... 21 2 20 0.05 1 0 0 0 1 0 0 0

Anti-sense strand reads

GGAACAATCGTTACTTGTGTTAATCATCGTGTGCACTCCATGGTCCGAGACGTGAACCGGGTCTCAAGTGTGAGTCCCGAGTAACGACGGTAACAAAGACAGAAGCAAGGACAACAATAATGACCTGAACCTCAGTCTTCGTCCAAGCTTAGGGTTGAGGTGGTAGGAAATCGACGTCAGGAACCCGGTGTAAACATTGGAGGGACTTATAG

***********************************((((.....(((...(((...(((((.((((....)))).)))))...))).)))..((((((((.(((((.(((.((.......)).)))..))))).))))))))(((..((........)).)))..))))........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116844

epididymis
........................................................................................................................................CTACGTCCAAGCTTAGGC.......................................................... 18 2 20 0.05 1 1

Generated: 09/01/2015 at 12:24 PM