ID:

mml-mir-376c

 Coordinate:

chr7:164938114-164938179 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.2 -32.9 -32.9
mature

star

  1. mml-mir-376c  chr7:164938119-164938139 +
  2. mml-mir-376b  chr7:164938883-164938903 +

Sense Strand Reads

GATTGTGCTTAGGTTCATGCTTTCCAGGACTCAATCCTTCTTTGGTATTTAAAAGGTGGATATTCCTTCTATGTTTATGTTATTTATGGTTAAACATAGAGGAAATTCCACGTTTTCAGTATCAAATGCTGCTTGGAAACATTCCTGGACTGAAACCACCGTCAGG

****************************************(((((((((.((((.(((((..(((((.(((((((((.............))))))))))))))..))))).)))).)))))))))..************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116841

prostate		 SRR116840

epididymis		 SRR116844

epididymis		 SRR116842

seminal vesicle		 SRR116839

testes		 SRR116845

epididymis
............................................................................................AACATGGAGGAAATTCCACGT..................................................... 21 1 1 514.00 514 380 44 68 0 19 3 0
............................................................................................AACATAGAGGAAATTCCACGT..................................................... 21 0 1 459.00 459 165 175 85 0 29 5 0
............................................................................................AACATGGAGGAAATTCCACG...................................................... 20 1 1 44.00 44 27 3 9 0 3 2 0
............................................................................................AACATAGAGGAAATTCCACGTT.................................................... 22 0 1 44.00 44 4 28 7 0 3 2 0
............................................................................................AACATAGAGGAAATTCCACGTATC.................................................. 24 2 2 35.50 71 0 0 0 63 0 0 8
............................................................................................AACATAGAGGAAATTCCACG...................................................... 20 0 1 21.00 21 8 10 3 0 0 0 0
............................................................................................AACATAGAGGAAATTCCACGTA.................................................... 22 1 1 15.00 15 6 7 1 0 0 1 0
............................................................................................AACATAGAGGAAATTCCACGTTATC................................................. 25 1 1 13.00 13 0 0 0 12 0 0 1
............................................................................................AACATGGAGGAAATTCCACGTATC.................................................. 24 3 2 9.50 19 0 0 0 13 0 0 6
............................................................................................AACATAGAGGAAATTCCACTT..................................................... 21 1 1 8.00 8 3 2 3 0 0 0 0
...........................................................................................AAACATAGAGGAAATTCCACG...................................................... 21 0 1 5.00 5 0 5 0 0 0 0 0
.......................................................GTGGATATTCCTTCTATGTTTATC....................................................................................... 24 1 1 5.00 5 0 0 0 4 0 0 1
............................................................................................AACATAGAGGAAATTCCACGTTT................................................... 23 0 1 4.00 4 1 2 1 0 0 0 0
............................................................................................AACATGGAGGAAATTCCACGTA.................................................... 22 2 1 4.00 4 3 1 0 0 0 0 0
............................................................................................AACATGGAGGAAATTCCACGTTATC................................................. 25 2 1 4.00 4 0 0 0 4 0 0 0
............................................................................................AACATAGAGGAAATTCCACGTTA................................................... 23 1 1 3.00 3 1 2 0 0 0 0 0
............................................................................................AACATAGAGGAAATTCCACGTTC................................................... 23 1 1 3.00 3 0 0 0 3 0 0 0
............................................................................................AACATAGAGGAAATTCCA........................................................ 18 0 1 2.00 2 0 1 0 0 1 0 0
............................................................................................AACATGGAGGAAATTCCACGTAA................................................... 23 3 3 2.00 6 5 1 0 0 0 0 0
............................................................................................AACATAGAGGAAATTCCACGATC................................................... 23 2 1 2.00 2 0 0 0 2 0 0 0
.............................................................................................ACATGGAGGAAATTCCACGTTATC................................................. 24 2 1 2.00 2 0 0 0 2 0 0 0
.............................................................................................ACATGGAGGAAATTCCACG...................................................... 19 1 1 2.00 2 2 0 0 0 0 0 0
.......................................................GTGGATATTCCTTCTATGTTT.......................................................................................... 21 0 2 1.50 3 1 1 1 0 0 0 0
.......................................................GTGGATATTCCTTCTATGTTTA......................................................................................... 22 0 2 1.50 3 0 1 0 2 0 0 0
............................................................................................AACATGGAGGAAATTCCACGC..................................................... 21 2 2 1.50 3 3 0 0 0 0 0 0
............................................................................................ACCATAGAGGAAATTCCACG...................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................GTGGATTTTCCTTCTATGGTTATC....................................................................................... 24 3 2 1.00 2 0 0 0 2 0 0 0
............................................................................................AACGTAGAGGAAATTCCACGT..................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0
............................................................................................AACATGGAGGAAATTCCGCGT..................................................... 21 2 2 1.00 2 2 0 0 0 0 0 0
......................................................GGTGGATATTCCTTCTATGTTT.......................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................AACATAGAGGAAATTCCACGTG.................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................AAACATGGAGGAAATTCCCCG...................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0
............................................................................................AACATAGAGGAAATTCCACGTTCTC................................................. 25 1 1 1.00 1 0 0 0 1 0 0 0
............................................................................................AACATAGAGGAAATTCCACGTAATC................................................. 25 2 1 1.00 1 0 0 0 1 0 0 0
...........................................................................................AAACATAGAGGAAATTCCA........................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0
............................................................................................AACATAGAGGAAATTCCACGTAT................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
............................................................................................AACATAGAGGAAATTCCACGTATT.................................................. 24 1 1 1.00 1 0 0 0 1 0 0 0
...........................................................................................AAACATAGAGGAAATTCCACGT..................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................AAAACATGGAGGAAATTCCACGT..................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................AACATAGAGGAAATTCCACTTTATC................................................. 25 2 1 1.00 1 0 0 0 1 0 0 0
............................................................................................AACACAGAGGAAATTCCACGT..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................AACATAGAGGAAATTCAACGT..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................AACATGGAGGAAATTCCCCGT..................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0
............................................................................................AACATAGAGGAAATTACACGT..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
........................................................TGGATATTCCTTCTATGTTTATC....................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0
............................................................................................AACATAGATGAAATTCCACGTTT................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
............................................................................................AACATAGAGGAAATTCCACGCATC.................................................. 24 3 4 1.00 4 0 0 0 4 0 0 0
.............................................................................................ACATAGAGGAAATTCCACGTT.................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
............................................................................................AACATAGAGGAAATTCCAC....................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................AACATAGAGGAAATTCCACGTAA................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0
............................................................................................AACATCGAGGAAATTCCACGT..................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................TAAACATAGAGGAAATTCCACG...................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................ACATAGAGGAAATTCCACGTTT................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................TAAACATAGAGGAAATTCCACGATC................................................... 25 2 1 1.00 1 0 0 0 1 0 0 0
............................................................................................AACATGGAGGAGATTCCACGT..................................................... 21 2 5 0.60 3 3 0 0 0 0 0 0
............................................................................................AACATTGAGGAAATTCCACGT..................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................GTGGATATTCCTTCTATGTATC......................................................................................... 22 2 2 0.50 1 0 0 0 1 0 0 0
............................................................................................AATATGGAGGAAATTCCACGT..................................................... 21 2 4 0.50 2 2 0 0 0 0 0 0
.......................................................GTGGATATTCCTTCTATTTTTA......................................................................................... 22 1 2 0.50 1 0 0 1 0 0 0 0
.......................................................GTGGATTTTCCTTCTATGTTT.......................................................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0
............................................................................................AACATGGAGGAAGTTCCACGT..................................................... 21 2 4 0.50 2 1 1 0 0 0 0 0
............................................................................................AACATAGAGGAAATTCCCCGTATC.................................................. 24 3 3 0.33 1 0 0 0 1 0 0 0
......................................................GGTGGATATTCCTTCTATGTTATC........................................................................................ 24 3 3 0.33 1 0 0 0 1 0 0 0
............................................................................................AACATGGAGGAAATTTCACGT..................................................... 21 2 6 0.33 2 0 1 1 0 0 0 0
..........................................................................................TAAACATAGAGGAAATTCCATC...................................................... 22 2 3 0.33 1 0 0 0 0 0 0 1
............................................................................................AACATGGAGGACATTCCACGT..................................................... 21 2 3 0.33 1 1 0 0 0 0 0 0
.............................................................................................ACATGGAGGAAATTCCAGGTTATC................................................. 24 3 4 0.25 1 0 0 0 1 0 0 0
............................................................................................AACATGGAGGAAATTCCACGATC................................................... 23 3 8 0.25 2 0 0 0 2 0 0 0
............................................................................................AACATAGAGGAAAATCCACGT..................................................... 21 1 4 0.25 1 0 1 0 0 0 0 0
............................................................................................AACATGGAGGGAATTCCACGT..................................................... 21 2 4 0.25 1 0 1 0 0 0 0 0
........................................................TGGGTGTTCCTTCTATGTTTATC....................................................................................... 23 3 5 0.20 1 0 0 0 0 0 0 1
............................................................................................AACATGGAGGATATTCCACGT..................................................... 21 2 6 0.17 1 1 0 0 0 0 0 0
............................................................................................AACATGGAGGAAATTCCAC....................................................... 19 1 6 0.17 1 0 0 1 0 0 0 0
............................................................................................AACATGGAGGTAATTCCACG...................................................... 20 2 7 0.14 1 0 1 0 0 0 0 0
............................................................................................AACATGGAGGAAATTCCACGCA.................................................... 22 3 16 0.13 2 2 0 0 0 0 0 0
............................................................................................ATCATGGAGGAAATTCCACGT..................................................... 21 2 8 0.13 1 1 0 0 0 0 0 0
............................................................................................AACATAGAGGAAATTCAAAGT..................................................... 21 2 11 0.09 1 0 1 0 0 0 0 0
............................................................................................AACATGGAGGAAATTCCAAGT..................................................... 21 2 12 0.08 1 0 1 0 0 0 0 0

Anti-sense strand reads

CTAACACGAATCCAAGTACGAAAGGTCCTGAGTTAGGAAGAAACCATAAATTTTCCACCTATAAGGAAGATACAAATACAATAAATACCAATTTGTATCTCCTTTAAGGTGCAAAAGTCATAGTTTACGACGAACCTTTGTAAGGACCTGACTTTGGTGGCAGTCC

**************************************(((((((((.((((.(((((..(((((.(((((((((.............))))))))))))))..))))).)))).)))))))))..**************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:30 PM