ID:

mml-mir-376a-2

 Coordinate:

chr7:164938492-164938571 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-32.9 -32.2 -32.2
mature

  1. mml-mir-376a-2  chr7:164938541-164938561 +
  2. mml-mir-376a-1  chr7:164939248-164939268 +
star

Sense Strand Reads

GTTTGATGGATTGTACTTAGGTTCGTGCTTTCCGGGATGAAACCTTCTTTGGTATTTAAAAGGTAGATTTTCCTTCTATGGTTACGTGTTTGATGGTTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGCCTTGGGATCATGGCTGGACGGAAGCCACCAGCTGGGACGTG

***********************************............(((((((((.((((.((.(((((((((.((((((((((((.....)))..)))))))))))))))))).)).)))).)))))))))............*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116840

epididymis		 SRR116841

prostate		 SRR116844

epididymis		 SRR116845

epididymis		 SRR116842

seminal vesicle		 SRR116839

testes
...................................................................................................ATCATGGAGGAAAATCCACGT............................................................ 21 1 2 145.00 290 137 66 69 0 0 13 5
..............................................................GTAGATTTTCCTTCTATGGTTATC.............................................................................................. 24 2 1 39.00 39 0 0 0 29 10 0 0
...................................................................................................ATCATAGAGGAAAATCCACGT............................................................ 21 0 2 22.50 45 23 12 9 0 0 0 1
...................................................................................................ATCATGGAGGAAAATCCACG............................................................. 20 1 2 8.00 16 3 10 2 0 0 1 0
...................................................................................................ATCATGGAGGAAAATCCACGTT........................................................... 22 1 2 6.00 12 1 5 5 0 0 1 0
..................................................................................................AATCATAGAGGAAAATCCACGT............................................................ 22 0 2 5.50 11 8 0 1 0 0 2 0
...................................................................................................ATCATGGAGGAAAATCCACGTA........................................................... 22 2 3 5.00 15 6 5 4 0 0 0 0
...................................................................................................ATCATGGAGGAAAATCCACGTAATC........................................................ 25 3 2 4.00 8 0 0 0 7 1 0 0
...................................................................................................ATCATAGAGGAAAATCCACGTT........................................................... 22 0 2 3.50 7 1 3 2 0 0 0 1
...................................................................................................ATCATGGAGGAAAATCCACGTTATC........................................................ 25 2 2 3.50 7 0 0 0 6 1 0 0
..............................................................GTAGATTTTCCTTCTATGGTATC............................................................................................... 23 2 1 3.00 3 0 0 0 1 2 0 0
...................................................................................................ATCATGGAGGAAAATCCACGTATC......................................................... 24 3 3 2.67 8 0 0 0 4 4 0 0
......................................................................................................ATAGAGGAAAATCCACGTTTT......................................................... 21 0 2 1.50 3 2 1 0 0 0 0 0
...................................................................................................ATCATGGAGGAAAATCCACGATC.......................................................... 23 3 5 1.00 5 0 0 0 3 2 0 0
...................................................................................................ATCATAGAGGAAAATCCACG............................................................. 20 0 2 1.00 2 1 1 0 0 0 0 0
..............................................................GTGGATTTTCCTTCTATGGTTATC.............................................................................................. 24 3 2 1.00 2 0 0 0 2 0 0 0
..............................................................GTAGATTTTCCTTCTATGGTTAATC............................................................................................. 25 3 1 1.00 1 0 0 0 1 0 0 0
...................................................................................................ATCATGGAGGAAAATCCACGTAA.......................................................... 23 3 10 0.80 8 2 2 3 0 0 1 0
...................................................................................................ATCATAGAGGAAAATCCACGATC.......................................................... 23 2 3 0.67 2 0 0 0 0 2 0 0
...................................................................................................ATCATAGAGGAAAATCCACGCA........................................................... 22 2 3 0.67 2 0 0 2 0 0 0 0
...................................................................................................ATCATAGAGGAAAATCCACGTA........................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0
...................................................................................................ATCATGGAGGAAAATCCACGTGATC........................................................ 25 3 2 0.50 1 0 0 0 1 0 0 0
...................................................................................................ATCATAGAGGAGAATCCACGT............................................................ 21 1 2 0.50 1 1 0 0 0 0 0 0
...................................................................................................ATCATGGAGGACAATCCACGTT........................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0
..................................................................................................AATCATAGAGGAAAATCCACG............................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0
...................................................................................................ATCATGGAGGAAAATCCACGTTT.......................................................... 23 1 2 0.50 1 0 1 0 0 0 0 0
....................................................................................................TCATAGAGGAAAATCCACGTT........................................................... 21 0 2 0.50 1 0 1 0 0 0 0 0
...................................................................................................ATCATGGAGGAAAATCCACGTG........................................................... 22 2 2 0.50 1 0 0 1 0 0 0 0
...................................................................................................ATCATAGAGGAAAATCCACGTGT.......................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0
...................................................................................................ATCATAGAGGAAAATCCACGTAA.......................................................... 23 2 2 0.50 1 1 0 0 0 0 0 0
...................................................................................................ATCATAGAGGAAAATTCACGT............................................................ 21 1 2 0.50 1 1 0 0 0 0 0 0
..............................................................GTAGATTTTCCTTCTATGGTAATC.............................................................................................. 24 3 2 0.50 1 0 0 0 1 0 0 0
....................................................................................................TCATGGAGGAAAATCCACGTTATC........................................................ 24 2 2 0.50 1 0 0 0 1 0 0 0
...................................................................................................ATCATGGAGGACAATCCACGT............................................................ 21 2 2 0.50 1 0 1 0 0 0 0 0
...................................................................................................ATCATGGAGGAAGATCCACGT............................................................ 21 2 3 0.33 1 1 0 0 0 0 0 0
...................................................................................................ATCATGGAGGAAAATCCAC.............................................................. 19 1 6 0.33 2 0 2 0 0 0 0 0
...................................................................................................ATCATAGAGGAAAATCCACTT............................................................ 21 1 3 0.33 1 0 0 1 0 0 0 0
...................................................................................................ATCATGGGGGAAAATCCACGTT........................................................... 22 2 3 0.33 1 0 1 0 0 0 0 0
....................................................................................................TCATGGAGGAAAATCCACGTA........................................................... 21 2 4 0.25 1 1 0 0 0 0 0 0
...................................................................................................ATCATGGAGGAAAATCAACGT............................................................ 21 2 4 0.25 1 0 1 0 0 0 0 0
...................................................................................................ATCATGGAGGAAAGTCCACGT............................................................ 21 2 4 0.25 1 1 0 0 0 0 0 0
..............................................................GTAGATTTTCCTTCTATGATC................................................................................................. 21 2 4 0.25 1 0 0 0 0 1 0 0
...................................................................................................AACATAGAGGAAAATCCACGT............................................................ 21 1 4 0.25 1 0 0 1 0 0 0 0
...................................................................................................ATCATGTAGGAAAATCCACGT............................................................ 21 2 5 0.20 1 0 0 1 0 0 0 0
..............................................................GTAGATTTTTCTTCTATGGTTATC.............................................................................................. 24 3 5 0.20 1 0 0 0 0 1 0 0
...................................................................................................ATCATGGAGTAAAATCCACGT............................................................ 21 2 5 0.20 1 1 0 0 0 0 0 0
..............................................................GTAGATTTTCCTTCTCTGGTTATC.............................................................................................. 24 3 6 0.17 1 0 0 0 1 0 0 0
...................................................................................................ATCATGGAGGAGAATCCACG............................................................. 20 2 6 0.17 1 1 0 0 0 0 0 0
...................................................................................................ATAATGGAGGAAAATCCACGT............................................................ 21 2 6 0.17 1 0 0 0 0 0 1 0
...................................................................................................ATCATGGAGGAAAGTCCACG............................................................. 20 2 7 0.14 1 1 0 0 0 0 0 0
...................................................................................................ATCATGGAGGAAATTCCACGT............................................................ 21 2 8 0.13 1 1 0 0 0 0 0 0
...................................................................................................ATCATGGAGGAAAATCCACGCA........................................................... 22 3 18 0.06 1 0 1 0 0 0 0 0

Anti-sense strand reads

CAAACTACCTAACATGAATCCAAGCACGAAAGGCCCTACTTTGGAAGAAACCATAAATTTTCCATCTAAAAGGAAGATACCAATGCACAAACTACCAATTAGTATCTCCTTTTAGGTGCAAAAGTCATAGTTTACGACGGAACCCTAGTACCGACCTGCCTTCGGTGGTCGACCCTGCAC

***********************************............(((((((((.((((.((.(((((((((.((((((((((((.....)))..)))))))))))))))))).)).)))).)))))))))............*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:30 PM