ID:

mml-mir-376a-1

 Coordinate:

chr7:164939205-164939272 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-26.4 -26.0 -26.0
mature

  1. mml-mir-376a-2  chr7:164938541-164938561 +
  2. mml-mir-376a-1  chr7:164939248-164939268 +
star

Sense Strand Reads

GACTCAAGCACAGGTGCGCGTTTTCCTGGATGGAATCCTTCTTTGGTATTTAAAAGGTAGATTCTCCTTCTATGAGTACATTATTTATGATTAATCATAGAGGAAAATCCACGTTTTCAGTATCAAATGCTGCTTTGAAAACCTCGGAGGACGTGAAGTCGCCATGGA

***************************************..(((((((((.((((.((.((((.((((.((((((...(((.....))).....)))))))))).)))).)).)))).)))))))))..*************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116844

epididymis		 SRR116845

epididymis		 SRR116843

cortex		 SRR116840

epididymis		 SRR116841

prostate		 SRR116842

seminal vesicle		 SRR116839

testes
........................................................GTAGATTCTCCTTCTATGAGTATC........................................................................................ 24 2 1 578.00 578 425 153 0 0 0 0 0
.............................................................................................ATCATGGAGGAAAATCCACGT...................................................... 21 1 2 145.00 290 0 0 137 66 69 13 5
........................................................GTAGATTCTCCTTCTATGAGTAATC....................................................................................... 25 3 1 110.00 110 74 36 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTAAATC...................................................................................... 26 2 1 84.00 84 56 28 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTACATC...................................................................................... 26 1 1 46.00 46 33 13 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGATC......................................................................................... 23 2 1 33.00 33 30 3 0 0 0 0 0
.............................................................................................ATCATAGAGGAAAATCCACGT...................................................... 21 0 2 22.50 45 0 0 23 12 9 0 1
.............................................................................................ATCATGGAGGAAAATCCACG....................................................... 20 1 2 8.00 16 0 0 3 10 2 1 0
........................................................GTAGCTTCTCCTTCTATGAGTATC........................................................................................ 24 3 2 7.00 14 10 4 0 0 0 0 0
.............................................................................................ATCATGGAGGAAAATCCACGTT..................................................... 22 1 2 6.00 12 0 0 1 5 5 1 0
............................................................................................AATCATAGAGGAAAATCCACGT...................................................... 22 0 2 5.50 11 0 0 8 0 1 2 0
.............................................................................................ATCATGGAGGAAAATCCACGTA..................................................... 22 2 3 5.00 15 0 0 6 5 4 0 0
......................................................AGGTAGATTCTCCTTCTATG.............................................................................................. 20 0 1 4.00 4 0 0 3 1 0 0 0
.............................................................................................ATCATGGAGGAAAATCCACGTAATC.................................................. 25 3 2 4.00 8 7 1 0 0 0 0 0
......................................................AGGTAGATTCTCCTTCTATGAGT........................................................................................... 23 0 1 4.00 4 0 0 4 0 0 0 0
.............................................................................................ATCATAGAGGAAAATCCACGTT..................................................... 22 0 2 3.50 7 0 0 1 3 2 0 1
.............................................................................................ATCATGGAGGAAAATCCACGTTATC.................................................. 25 2 2 3.50 7 6 1 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTACTATC..................................................................................... 27 3 1 3.00 3 3 0 0 0 0 0 0
......................................................AGGTAGATTCTCCTTCTAT............................................................................................... 19 0 1 3.00 3 0 0 2 1 0 0 0
.............................................................................................ATCATGGAGGAAAATCCACGTATC................................................... 24 3 3 2.67 8 4 4 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTAAT........................................................................................ 24 2 1 2.00 2 0 2 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTAATA....................................................................................... 25 3 1 2.00 2 2 0 0 0 0 0 0
........................................................GTAGATTATCCTTCTATGAGTATC........................................................................................ 24 3 1 2.00 2 1 1 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTAC......................................................................................... 23 0 1 2.00 2 0 0 2 0 0 0 0
......................................................AGGTAGATTCTCCTTCTATGAGTATC........................................................................................ 26 2 1 2.00 2 2 0 0 0 0 0 0
......................................................AGGTGGATTCTCCTTCTATGAGT........................................................................................... 23 1 1 2.00 2 0 0 2 0 0 0 0
........................................................GTAGTTTCTCCTTCTATGAGTAAATC...................................................................................... 26 3 1 2.00 2 2 0 0 0 0 0 0
......................................................AGGTAGATTCTCCTTCTATGA............................................................................................. 21 0 1 2.00 2 0 0 0 0 2 0 0
........................................................GTAGATTCTCCCTCTATGAGTAAATC...................................................................................... 26 3 1 2.00 2 2 0 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTCTC........................................................................................ 24 3 1 2.00 2 1 1 0 0 0 0 0
................................................................................................ATAGAGGAAAATCCACGTTTT................................................... 21 0 2 1.50 3 0 0 2 1 0 0 0
........................................................GTAGATTCTCCTTCTTTGAGTATC........................................................................................ 24 3 3 1.33 4 3 1 0 0 0 0 0
........................................................GTGGATTCTCCTTCTATGAGTATC........................................................................................ 24 3 3 1.33 4 4 0 0 0 0 0 0
.........................................................TAGATTCTCCTTCTATGAGTACATC...................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0
........................................................GTGGATTCTCCTTCTATGAGTACA........................................................................................ 24 1 1 1.00 1 0 0 1 0 0 0 0
........................................................GCAGATTCTCCTTCTATGAGTACATC...................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTAT......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
......................................................AGGTAGATTCTCCTTCTATGATT........................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTACAATC..................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTAGATC...................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0
........................................................GTAGATTCTCCTTTTATGAGTACATC...................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0
........................................................GTGGATTCTCCTTCTATGAGTAAATC...................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
...............................................................................ATTATTTATGATTAATCATAGAGGAAAATCC.......................................................... 31 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................TAGATTCTCCTTCTATGAGTAAATC...................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0
.......................................................GGTGGATTCTCCTTCTATGAGTAA......................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTGAATC...................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
........................................................GTAGGTTCTCCTTCTATGAGTATC........................................................................................ 24 3 2 1.00 2 1 1 0 0 0 0 0
........................................................GTAGATTCTCGTTCTATGAGTATC........................................................................................ 24 3 1 1.00 1 0 1 0 0 0 0 0
......................................................AGGTGGATTCTCCTTCTATGA............................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTTC......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
........................................................GTAGATTCTCTTTCTATGAGTAAATC...................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTAAATT...................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTAAA........................................................................................ 24 1 1 1.00 1 0 1 0 0 0 0 0
........................................................GTGGCTTCTCCTTCTATGAGTACATC...................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
........................................................GTAGATTCTCCTTCTCTGAGTACATC...................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................GGTAGATTCTCCTTCTATGAGTATATC...................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTA.......................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTAACTC...................................................................................... 26 3 1 1.00 1 0 1 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGATC........................................................................................... 21 2 4 1.00 4 4 0 0 0 0 0 0
......................................................AGGTAGATTCTCCTTCTATGAG............................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................ATCATAGAGGAAAATCCACG....................................................... 20 0 2 1.00 2 0 0 1 1 0 0 0
......................................................AGGTAGATTCTCCTTCTATTAGT........................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTATATC...................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTACCTC...................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0
.........................................................TAGATTCTCCTTCTATGAGTCAATC...................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTAA......................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
........................................................GTCGATTCTCCTTCTATGAGTATC........................................................................................ 24 3 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................ATCATGGAGGAAAATCCACGATC.................................................... 23 3 5 1.00 5 3 2 0 0 0 0 0
........................................................GTGGATTCTCCTTCTATGAGTACATC...................................................................................... 26 2 1 1.00 1 1 0 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTATT........................................................................................ 24 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................ATCATGGAGGAAAATCCACGTAA.................................................... 23 3 10 0.80 8 0 0 2 2 3 1 0
.............................................................................................ATCATAGAGGAAAATCCACGATC.................................................... 23 2 3 0.67 2 0 2 0 0 0 0 0
.............................................................................................ATCATAGAGGAAAATCCACGCA..................................................... 22 2 3 0.67 2 0 0 0 0 2 0 0
.............................................................................................ATCATGGAGGACAATCCACGTT..................................................... 22 2 2 0.50 1 0 0 1 0 0 0 0
........................................................GTAGATTCTCCTACTATGAGATC......................................................................................... 23 3 2 0.50 1 1 0 0 0 0 0 0
........................................................CTAGATTCTCCTTCTATGAGTATC........................................................................................ 24 3 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................ATCATAGAGGAGAATCCACGT...................................................... 21 1 2 0.50 1 0 0 1 0 0 0 0
.............................................................................................ATCATAGAGGAAAATCCACGTGT.................................................... 23 1 2 0.50 1 0 0 1 0 0 0 0
........................................................GTAGTTTCTCCTTCTATGAGTATC........................................................................................ 24 3 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................ATCATAGAGGAAAATTCACGT...................................................... 21 1 2 0.50 1 0 0 1 0 0 0 0
.............................................................................................ATCATAGAGGAAAATCCACGTAA.................................................... 23 2 2 0.50 1 0 0 1 0 0 0 0
........................................................GTAGACTCTCCTTCTATGAGTATC........................................................................................ 24 3 2 0.50 1 0 1 0 0 0 0 0
.............................................................................................ATCATGGAGGAAAATCCACGTG..................................................... 22 2 2 0.50 1 0 0 0 0 1 0 0
.............................................................................................ATCATGGAGGAAAATCCACGTTT.................................................... 23 1 2 0.50 1 0 0 0 1 0 0 0
.............................................................................................ATCATAGAGGAAAATCCACGTA..................................................... 22 1 2 0.50 1 0 0 1 0 0 0 0
.............................................................................................ATCATGGAGGACAATCCACGT...................................................... 21 2 2 0.50 1 0 0 0 1 0 0 0
.............................................................................................ATCATGGAGGAAAATCCACGTGATC.................................................. 25 3 2 0.50 1 1 0 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTAAAATC..................................................................................... 27 3 2 0.50 1 1 0 0 0 0 0 0
........................................................GTGGATTCTCCTTCTATGAGTATATC...................................................................................... 26 3 2 0.50 1 1 0 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATTAGTATC........................................................................................ 24 3 2 0.50 1 0 1 0 0 0 0 0
..............................................................................................TCATGGAGGAAAATCCACGTTATC.................................................. 24 2 2 0.50 1 1 0 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTTTC........................................................................................ 24 3 4 0.50 2 1 1 0 0 0 0 0
..............................................................................................TCATAGAGGAAAATCCACGTT..................................................... 21 0 2 0.50 1 0 0 0 1 0 0 0
............................................................................................AATCATAGAGGAAAATCCACG....................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0
........................................................GTAGATTCTCCTTCTATCAGTATC........................................................................................ 24 3 3 0.33 1 0 1 0 0 0 0 0
........................................................GTAGATTCTCCTTCTATGAGTGTC........................................................................................ 24 3 3 0.33 1 1 0 0 0 0 0 0
.........................................................................................ATGTATCATAGAGGAAAATCC.......................................................... 21 2 3 0.33 1 0 0 0 0 1 0 0
........................................................GTAGATTTTCCTTCTATGAGTATC........................................................................................ 24 3 3 0.33 1 1 0 0 0 0 0 0
.........................................................TAGATTCTCCTTCTATTAGTAA......................................................................................... 22 2 3 0.33 1 0 0 0 1 0 0 0
.............................................................................................ATCATGGGGGAAAATCCACGTT..................................................... 22 2 3 0.33 1 0 0 0 1 0 0 0
........................................................GTAGATTCTCCTTCTATGAGCATC........................................................................................ 24 3 3 0.33 1 1 0 0 0 0 0 0
........................................................GTGGATTCTCCTTCTATGAGT........................................................................................... 21 1 3 0.33 1 0 0 1 0 0 0 0
.............................................................................................ATCATAGAGGAAAATCCACTT...................................................... 21 1 3 0.33 1 0 0 0 0 1 0 0
.............................................................................................ATCATGGAGGAAGATCCACGT...................................................... 21 2 3 0.33 1 0 0 1 0 0 0 0
.............................................................................................ATCATGGAGGAAAATCCAC........................................................ 19 1 6 0.33 2 0 0 0 2 0 0 0
.............................................................................................AACATAGAGGAAAATCCACGT...................................................... 21 1 4 0.25 1 0 0 0 0 1 0 0
..............................................................................................TCATGGAGGAAAATCCACGTA..................................................... 21 2 4 0.25 1 0 0 1 0 0 0 0
........................................................GTAGATTCTCCTTCTCTGAGATC......................................................................................... 23 3 4 0.25 1 1 0 0 0 0 0 0
.............................................................................................ATCATGGAGGAAAGTCCACGT...................................................... 21 2 4 0.25 1 0 0 1 0 0 0 0
.............................................................................................ATCATGGAGGAAAATCAACGT...................................................... 21 2 4 0.25 1 0 0 0 1 0 0 0
.............................................................................................ATCATGGAGTAAAATCCACGT...................................................... 21 2 5 0.20 1 0 0 1 0 0 0 0
.............................................................................................ATCATGTAGGAAAATCCACGT...................................................... 21 2 5 0.20 1 0 0 0 0 1 0 0
.............................................................................................ATCATGGAGGAGAATCCACG....................................................... 20 2 6 0.17 1 0 0 1 0 0 0 0
.............................................................................................ATAATGGAGGAAAATCCACGT...................................................... 21 2 6 0.17 1 0 0 0 0 0 1 0
.............................................................................................ATCATGGAGGAAAGTCCACG....................................................... 20 2 7 0.14 1 0 0 1 0 0 0 0
.............................................................................................ATCATGGAGGAAATTCCACGT...................................................... 21 2 8 0.13 1 0 0 1 0 0 0 0
.............................................................................................ATCATGGAGGAAAATCCACGCA..................................................... 22 3 18 0.06 1 0 0 0 1 0 0 0

Anti-sense strand reads

CTGAGTTCGTGTCCACGCGCAAAAGGACCTACCTTAGGAAGAAACCATAAATTTTCCATCTAAGAGGAAGATACTCATGTAATAAATACTAATTAGTATCTCCTTTTAGGTGCAAAAGTCATAGTTTACGACGAAACTTTTGGAGCCTCCTGCACTTCAGCGGTACCT

***************************************..(((((((((.((((.((.((((.((((.((((((...(((.....))).....)))))))))).)))).)).)))).)))))))))..*************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:30 PM