ID:

mml-mir-373

 Coordinate:

chr19:59628940-59629008 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-50.7 -50.7 -50.7

Sense Strand Reads

GTAGGCAAGAAAGTCGCAGTGATGGCAGATCCTTGCGAGCAGCTCATACTGGGATACCCAAAATGGGAGCACTTTCCCTTTTGTCTGTGCTGGGAAGTGCTTCGATTTTGGGGTGTCCCTGTTTGAGTAGGGCATCACAAACCATCCTGCTTCAAGGGAGCCTGCGGGT

***********************************...((.(((((.((.((((((((((((((.(((((((((.(((.............)))))))))))).))))).))))))))).)).)))))...)).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116845

epididymis		 SRR116844

epididymis		 SRR116840

epididymis		 SRR116839

testes		 SRR116841

prostate
.............................................................................................GAAGTGCTTCGATTTTGGGGTGTATC.................................................. 26 2 1 175.00 175 147 28 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGGGTGATC................................................... 25 2 1 33.00 33 27 6 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGGGTGAATC.................................................. 26 3 1 26.00 26 26 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGGGTATC.................................................... 24 1 1 23.00 23 23 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGGTTGTATC.................................................. 26 3 1 4.00 4 4 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGGGTGTA.................................................... 24 1 1 4.00 4 3 0 0 1 0
.............................................................................................GAAGTGCTTCGATTTTTGGGTGTATC.................................................. 26 3 1 3.00 3 3 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGGGTAATC................................................... 25 3 1 3.00 3 3 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGGGGGTATC.................................................. 26 3 1 3.00 3 2 1 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGGGTGTAT................................................... 25 2 1 3.00 3 3 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGGGATC..................................................... 23 3 3 2.67 8 7 1 0 0 0
..............................................................................................AAGTGCTTCGATTTTGGGGTGTAGAT................................................. 26 3 1 2.00 2 0 2 0 0 0
.............................................................................................GACGTGCTTCGATTTTGGGGTGTATC.................................................. 26 3 1 2.00 2 2 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTTGGGTGTTC................................................... 25 2 1 2.00 2 2 0 0 0 0
.............................................................................................GAAGTGCTCCGATTTTGGGGTGTATC.................................................. 26 3 1 1.00 1 1 0 0 0 0
..............................................................................................AAGTGCTTCGATTTTGGGGTGT..................................................... 22 0 1 1.00 1 0 0 1 0 0
.............................................................................................GAAGTGCTTCGATTTTGGGGTTTATC.................................................. 26 3 1 1.00 1 1 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGGGAATC.................................................... 24 2 1 1.00 1 1 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGTGGTGTATC.................................................. 26 3 1 1.00 1 0 1 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGGG........................................................ 20 0 1 1.00 1 0 0 1 0 0
................................................................................................GTGCTTCGATTTTGGGGTATC.................................................... 21 1 1 1.00 1 1 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGG......................................................... 19 0 1 1.00 1 0 0 1 0 0
.............................................................................................GAAGTGCTTCGCTTTTGGGGTGTATC.................................................. 26 3 1 1.00 1 1 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGGGTATATC.................................................. 26 3 2 1.00 2 2 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGGGTGT..................................................... 23 0 1 1.00 1 0 0 1 0 0
..............................................................................................AAGTGCTTCGATTTTGGGGTGA..................................................... 22 1 1 1.00 1 0 0 0 0 1
.............................................................................................GAAGTGCTTCGATTTTGGGGCGTATC.................................................. 26 3 1 1.00 1 1 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTTGGGTATC.................................................... 24 2 1 1.00 1 1 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTCGGGTGATC................................................... 25 3 1 1.00 1 1 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGGGTGCATC.................................................. 26 3 1 1.00 1 1 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGGGTGAAC................................................... 25 2 1 1.00 1 1 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGAGTGTATC.................................................. 26 3 1 1.00 1 1 0 0 0 0
.............................................................................................GAAGTGCTTCGATTTTGGGGTGAT.................................................... 24 2 2 0.50 1 0 0 1 0 0
.............................................................................................GAAGTGCTTCGATTTTGGAATC...................................................... 22 3 20 0.10 2 2 0 0 0 0

Anti-sense strand reads

CATCCGTTCTTTCAGCGTCACTACCGTCTAGGAACGCTCGTCGAGTATGACCCTATGGGTTTTACCCTCGTGAAAGGGAAAACAGACACGACCCTTCACGAAGCTAAAACCCCACAGGGACAAACTCATCCCGTAGTGTTTGGTAGGACGAAGTTCCCTCGGACGCCCA

***********************************...((.(((((.((.((((((((((((((.(((((((((.(((.............)))))))))))).))))).))))))))).)).)))))...)).*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116842

seminal vesicle
................................................................................................................................TCCCGTAGTGTTTGGA......................... 16 1 20 0.05 1 1

Generated: 09/01/2015 at 12:18 PM