ID:

mml-mir-365-2

 Coordinate:

chr16:27505795-27505905 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.8 -36.7 -36.5
mature

  1. mml-mir-365-2  chr16:27505862-27505883 +
  2. mml-mir-365-1  chr20:14465152-14465173 +
star

Sense Strand Reads

GCTTCACCTCGGCTCACCTGGGCGTGGCAGACGACTGCTTCCTCACCTGGAGAGTGTTCAAGGACAGCAAGAAAAATGAGGGACTTTCAGGGGCAGCTGTGTTTTCTGACTCAGTCATAATGCCCCTAAAAATCCTTATTGTTCTTGCAGTGTGCATCAGGCAGCAGCCAGCAACCTGCCCCTCACCCACCTGGCCCTTCTGGGAGGACTG

***************************************************************((.(((((((.((((((((..(((.(((((((((((.(((....))).)))).....))))))).))).)))))))).))))))).))...********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR116842

seminal vesicle		 SRR116841

prostate		 SRR116843

cortex		 SRR116840

epididymis		 SRR116845

epididymis		 SRR116844

epididymis		 SRR116839

testes
.....................................................................................................................TAATGCCCCTAAAAATCCTTAT........................................................................ 22 0 2 126.00 252 120 58 37 35 0 0 2
..............................................................................AGGGACTTTCAGGGGCAGCTGTG.............................................................................................................. 23 0 1 93.00 93 49 11 12 18 0 0 3
.............................................................................GAGGGACTTTCAGGGGCAGCTGT............................................................................................................... 23 0 1 56.00 56 20 7 23 4 0 0 2
.....................................................................................................................TAATGCCCCTAAAAATCCTTATTATC.................................................................... 26 2 1 26.00 26 0 0 0 0 18 8 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTA......................................................................... 21 0 2 25.50 51 35 6 3 6 0 0 1
..............................................................................AGGGACTTTCAGGGGCAGCTGT............................................................................................................... 22 0 1 25.00 25 10 5 5 3 0 0 2
..............................................................................AGGGACTTTCAGGGGCAGCTGTGT............................................................................................................. 24 0 1 24.00 24 9 5 6 2 0 0 2
.....................................................................................................................TAATGCCCCTAAAAATCCTTAATC...................................................................... 24 2 2 13.00 26 0 0 0 0 17 9 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTAA........................................................................ 22 1 2 11.00 22 13 4 0 5 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTATAATC.................................................................... 26 3 1 11.00 11 0 0 0 0 9 2 0
.............................................................................GAGGGACTTTCAGGGGCAGCTGTT.............................................................................................................. 24 1 1 9.00 9 4 1 3 1 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTATT....................................................................... 23 0 2 8.50 17 10 5 1 1 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTT.......................................................................... 20 0 2 7.50 15 8 3 3 1 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTGTTT............................................................................................................. 24 1 1 6.00 6 1 2 0 3 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTATC....................................................................... 23 1 2 5.50 11 0 0 0 0 7 4 0
..............................................................................AGGGACTTTCAGGGGCAGCTGTA.............................................................................................................. 23 1 1 5.00 5 3 1 0 1 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTGTAT............................................................................................................. 24 1 1 5.00 5 2 1 1 1 0 0 0
............................................................AGGACAGCAAGAAAAATGA.................................................................................................................................... 19 0 1 5.00 5 2 2 0 1 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTGTA.............................................................................................................. 24 1 1 4.00 4 3 0 1 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTATA....................................................................... 23 1 2 3.50 7 6 0 0 1 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTG................................................................................................................ 21 0 1 3.00 3 0 0 1 2 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTGTT.............................................................................................................. 23 1 1 3.00 3 0 1 2 0 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTAA............................................................................................................... 22 2 1 3.00 3 2 1 0 0 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTGTGA............................................................................................................. 24 1 1 3.00 3 2 0 0 1 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTAT............................................................................................................... 23 1 1 3.00 3 2 0 1 0 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTGTAA............................................................................................................. 24 2 1 3.00 3 0 0 0 1 0 0 2
..........................................................CAAGGACAGCAAGAAAAATGA.................................................................................................................................... 21 0 1 3.00 3 1 0 1 1 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCT................................................................................................................. 21 0 1 3.00 3 1 1 1 0 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCT................................................................................................................. 20 0 1 2.00 2 0 0 0 2 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTGTGAAT........................................................................................................... 26 2 1 2.00 2 2 0 0 0 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTGTAT............................................................................................................. 25 1 1 2.00 2 1 1 0 0 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTGTG.............................................................................................................. 24 0 1 2.00 2 1 1 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTAATATC.................................................................... 26 3 1 2.00 2 0 0 0 0 2 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTGTGATC........................................................................................................... 26 2 1 2.00 2 0 0 0 0 2 0 0
............................................................................TGAGGGACTTTCAGGGGCAGCTGT............................................................................................................... 24 0 1 2.00 2 1 0 1 0 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTGA............................................................................................................... 23 1 1 2.00 2 1 0 0 1 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTT................................................................................................................ 22 1 1 2.00 2 0 1 0 1 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTGTGTT............................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTG................................................................................................................ 22 0 1 2.00 2 0 0 2 0 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTAT............................................................................................................... 22 1 1 2.00 2 1 0 0 1 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTT................................................................................................................ 21 1 1 2.00 2 0 0 0 2 0 0 0
...........................................................AAGGACAGCAAGAAAAATGA.................................................................................................................................... 20 0 1 2.00 2 1 0 0 1 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGC.................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................................TAATGCCCCTGAAAATCCTTAT........................................................................ 22 1 2 1.50 3 1 1 1 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTT......................................................................... 21 1 2 1.50 3 2 1 0 0 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTGTGAT............................................................................................................ 25 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTCT........................................................................ 22 1 2 1.00 2 1 0 0 1 0 0 0
........................................................TTCAAGGACAGCAAGAAAAAT...................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTGG............................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTGAATC............................................................................................................ 26 3 1 1.00 1 0 0 0 0 1 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTTG............................................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTGTTTT............................................................................................................ 25 1 1 1.00 1 0 0 0 1 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTTT............................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1
..............................................................................AGGGACTTTCAGGGGCAGCTGGGATC........................................................................................................... 26 3 1 1.00 1 0 0 0 0 1 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTGTAA............................................................................................................. 25 2 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTAC........................................................................ 22 1 2 1.00 2 1 1 0 0 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTAA............................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTAAA....................................................................... 23 2 2 1.00 2 1 1 0 0 0 0 0
..............................................................................AGGGACTTTCAGGGGCATCTGTT.............................................................................................................. 23 2 1 1.00 1 0 0 0 1 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTGA............................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTA................................................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTGTGAA............................................................................................................ 25 2 1 1.00 1 0 0 0 1 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTGAAT............................................................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................GAGGGACTTTCGGGGGCAGCTGT............................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0
..............................................................................AGGGACTTTCAGGGGTAGCTGTG.............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTGTGT............................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTTT............................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTTTT.............................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAA................................................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTGTGTAT........................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTACTATC.................................................................... 26 3 1 1.00 1 0 0 0 0 1 0 0
.....................................................................................................................TAATTCCCCTAAAAATCCTTATTAATC................................................................... 27 3 2 1.00 2 0 0 0 0 2 0 0
.......................................................GTTCAAGGACAGCAAGAAAAATG..................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTTTT.............................................................................................................. 23 2 1 1.00 1 0 0 0 1 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTGTGTA............................................................................................................ 25 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................GGGACTTTCAGGGGCAGCTGTG.............................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTGAAA............................................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATC............................................................................. 17 0 2 1.00 2 1 1 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTAGTATC.................................................................... 26 3 1 1.00 1 0 0 0 0 1 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTGTTT............................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................GAGGGACTTTCAGGGCCAGCTGT............................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTTTG.............................................................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTACTC...................................................................... 24 2 2 1.00 2 0 0 0 0 1 1 0
.....................................................................................................................TAATGCCCCTAAAAATCCT........................................................................... 19 0 2 1.00 2 2 0 0 0 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTTTTT............................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCCGG............................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................GAGGGACTTTCAGGGGCATCTGT............................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................TTCTGACTCAGTCATAATC......................................................................................... 19 1 3 0.67 2 0 0 0 0 0 2 0
.....................................................................................................................TAATGCCCCTAAACATCCTTAT........................................................................ 22 1 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................TAATTCCCCTAAAAATCCTTAT........................................................................ 22 1 2 0.50 1 1 0 0 0 0 0 0
...............................................................................GGGACCTTCAGGGGCAGCTGTGA............................................................................................................. 23 2 2 0.50 1 0 1 0 0 0 0 0
.......................................................................................................................ATGCCCCTAAAAATCCTTATTA...................................................................... 22 1 2 0.50 1 0 0 1 0 0 0 0
.....................................................................................................................TAATGGCCCTAAAAATCCTTATC....................................................................... 23 2 2 0.50 1 0 0 0 0 1 0 0
....................................................................................................................ATAATGCCCCTAAAAATCCTT.......................................................................... 21 0 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................................ATAATGCCCCTAAAAATCCTTT......................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0
.....................................................................................................................TCATGCCCCTAAAAATCCTTAT........................................................................ 22 1 2 0.50 1 1 0 0 0 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTGAT.............................................................................................................. 23 2 2 0.50 1 0 0 0 1 0 0 0
.....................................................................................................................TAATGCCCTTAAAAATCCTTATTATC.................................................................... 26 3 2 0.50 1 0 0 0 0 1 0 0
.......................................................................................................................ATGCCCCTAAAAATCCTTAATA...................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAATAATCCTTA......................................................................... 21 1 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTAAT....................................................................... 23 1 2 0.50 1 0 0 0 0 1 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTATGC...................................................................... 24 2 2 0.50 1 0 0 0 1 0 0 0
.............................................................................GAGGGACTTTCAGGGGCAGCTGTAAA............................................................................................................ 26 3 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTATTAAAC................................................................... 27 3 2 0.50 1 0 0 1 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTCTT....................................................................... 23 1 2 0.50 1 0 0 1 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTTTT....................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAAACATCCTTAATC...................................................................... 24 3 2 0.50 1 0 0 0 0 1 0 0
.....................................................................................................................TAATGCCCTTAAAAATCCTT.......................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTATGGGGCT.................................................................. 28 3 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................TAATGCCACTAAAAATCCTTA......................................................................... 21 1 2 0.50 1 0 0 0 1 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTATTC...................................................................... 24 1 2 0.50 1 0 0 0 0 0 1 0
.....................................................................................................................TAATGCCCCTGAAAATCCTTATT....................................................................... 23 1 2 0.50 1 0 0 1 0 0 0 0
.....................................................................................................................TAATGCCCCTCAAAATCCTTA......................................................................... 21 1 2 0.50 1 0 1 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTTTT........................................................................ 22 1 2 0.50 1 1 0 0 0 0 0 0
.....................................................................................................................TAATCCCCCTAAAAATCCTTA......................................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATACTTA......................................................................... 21 1 3 0.33 1 1 0 0 0 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTTATT............................................................................................................. 24 3 3 0.33 1 0 0 0 1 0 0 0
..............................................................................AGGGACTTTCAGGGGCATGTGT............................................................................................................... 22 2 3 0.33 1 0 1 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAAT.............................................................................. 16 0 6 0.33 2 1 1 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAATCCTATT........................................................................ 22 2 4 0.25 1 0 1 0 0 0 0 0
.....................................................................................................................TAATGCCCCTGAAAATCCTTAATC...................................................................... 24 3 4 0.25 1 0 0 0 0 0 1 0
.....................................................................................................................TAATGCCCCTAAAAACCCTTAATC...................................................................... 24 3 4 0.25 1 0 0 0 0 0 1 0
.....................................................................................................................TAATGCCCCTAAACATCCTTCTA....................................................................... 23 3 6 0.17 1 1 0 0 0 0 0 0
..............................................................................AGGGACTTTCAGGGGCAGCTAAA.............................................................................................................. 23 3 7 0.14 1 0 0 0 1 0 0 0
.....................................................................................................................TAATGCCCATAAAAATACTTAT........................................................................ 22 2 10 0.10 1 0 1 0 0 0 0 0
.....................................................................................................................TAATGCCCCTAAAAA............................................................................... 15 0 11 0.09 1 0 1 0 0 0 0 0

Anti-sense strand reads

CGAAGTGGAGCCGAGTGGACCCGCACCGTCTGCTGACGAAGGAGTGGACCTCTCACAAGTTCCTGTCGTTCTTTTTACTCCCTGAAAGTCCCCGTCGACACAAAAGACTGAGTCAGTATTACGGGGATTTTTAGGAATAACAAGAACGTCACACGTAGTCCGTCGTCGGTCGTTGGACGGGGAGTGGGTGGACCGGGAAGACCCTCCTGAC

*********************************************************((.(((((((.((((((((..(((.(((((((((((.(((....))).)))).....))))))).))).)))))))).))))))).))...*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:13 PM