ID:

mml-mir-34a

 Coordinate:

chr1:12304469-12304578 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.5 -39.2 -38.9

Sense Strand Reads

GAGAGGCAGGACAGGCCTGTCCCCCGAGTCCCCTCCGGATGCCGTGGACCGGCCAGCTGTGAGTGTTTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGAGCAATAGTAAGGAAGCAATCAGCAAGTATACTGCCCTAGAAGTGCTACACATTGTGGGGCCTGAGAGGGAAGATGAGGCGAGAGATGCCCAGACCAGTGGGAGACGCCAGGA

********************************************************.(((((((((((((..(((((((((((.((((((((((....((....)).....))))))))))))).))))))))..))))))))).))))..*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116840

epididymis		 SRR116845

epididymis		 SRR116842

seminal vesicle		 SRR116839

testes		 SRR116844

epididymis		 SRR116841

prostate
..................................................................................................................AATCAGCAAGTATACTGCCCTA.......................................................................... 22 0 1 71.00 71 28 18 0 8 12 0 5
.......................................................................TGGCAGTGTCTTAGCTGGTT....................................................................................................................... 20 0 1 30.00 30 9 14 0 2 3 0 2
.......................................................................TGGCAGTGTCTTAGCTGGTTGTTATC................................................................................................................. 26 2 1 29.00 29 0 0 23 0 0 6 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGTATC.................................................................................................................. 25 3 1 28.00 28 0 0 21 0 0 7 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGT..................................................................................................................... 22 0 1 25.00 25 16 5 0 2 2 0 0
.................................................................................................................CAATCAGCAAGTATACTGCCCTA.......................................................................... 23 0 1 20.00 20 11 4 0 2 3 0 0
.................................................................................................................CAATCAGCAAGTATACTGCCCTT.......................................................................... 23 1 1 20.00 20 9 6 0 1 0 0 4
.......................................................................TGGCAGTGTCTTAGCTGGTTGATC................................................................................................................... 24 2 1 19.00 19 0 0 17 0 0 2 0
.................................................................................................................CAATCAGCAAGTATACTGCCCT........................................................................... 22 0 1 19.00 19 7 5 0 2 2 0 3
.......................................................................TGGCAGTGTCTTAGCTGGTTGTT.................................................................................................................... 23 0 1 15.00 15 7 2 0 5 1 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTG...................................................................................................................... 21 0 1 13.00 13 6 4 0 3 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGT........................................................................................................................ 19 0 1 6.00 6 4 2 0 0 0 0 0
.................................................................................................................CAATCAGCAAGTATACTGCCCTTT......................................................................... 24 2 1 5.00 5 1 3 0 0 1 0 0
..................................................................................................................AATCAGCAAGTATACTGCCCTT.......................................................................... 22 1 1 5.00 5 0 3 0 1 1 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGTTT................................................................................................................... 24 1 1 4.00 4 0 1 0 3 0 0 0
..................................................................................................................AATCAGCAAGTATACTGCCCT........................................................................... 21 0 1 4.00 4 1 1 0 1 1 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTTT..................................................................................................................... 22 1 1 4.00 4 3 1 0 0 0 0 0
.................................................................................................................CAATCAGCAAGTATACTGCCCTTA......................................................................... 24 2 1 3.00 3 0 1 0 0 0 0 2
.......................................................................TGGCAGTGTCTTAGCTGGTTGGTATC................................................................................................................. 26 3 1 3.00 3 0 0 2 0 0 1 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGTAATC................................................................................................................. 26 3 1 3.00 3 0 0 3 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTT...................................................................................................................... 21 1 1 3.00 3 1 2 0 0 0 0 0
...................................................................................................................ATCAGCAAGTATACTGCCCTAGTATC..................................................................... 26 3 1 2.00 2 0 0 2 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGTTGATC................................................................................................................ 27 3 1 2.00 2 0 0 2 0 0 0 0
.......................................................................TGGCAGTGTCTTAGTTGGTTGT..................................................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGGTAG.................................................................................................................. 25 3 1 2.00 2 0 0 2 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGTAT................................................................................................................... 24 2 1 2.00 2 0 0 0 2 0 0 0
.................................................................................................................CAATCAGCAAGTATACTGCCCCA.......................................................................... 23 1 1 2.00 2 0 1 0 0 1 0 0
...................................................................................................................ATCAGCAAGTATACTGCCCTAG......................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTA....................................................................................................................... 20 1 2 2.00 4 2 2 0 0 0 0 0
.................................................................................................................CAATCAGCAAGTATACTGCCATC.......................................................................... 23 2 1 2.00 2 0 0 2 0 0 0 0
.......................................................................TGGCATTGTCTTAGCTGGTTGTTATC................................................................................................................. 26 3 1 2.00 2 0 0 2 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGTAA................................................................................................................... 24 2 1 2.00 2 1 1 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGA..................................................................................................................... 22 1 2 2.00 4 2 2 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGG......................................................................................................................... 18 0 1 2.00 2 1 1 0 0 0 0 0
..................................................................................................................AATCAGCAAGTATACTGCCCTAT......................................................................... 23 1 1 2.00 2 1 0 0 0 0 0 1
.......................................................................TGGCAGTGTCTTAGTTGGTTGTT.................................................................................................................... 23 1 1 2.00 2 1 0 0 1 0 0 0
..................................................................................................................AATCAGCAAGTATACTGCCCTAA......................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................AGTAAGGAAGCAATCAGCAAGTATA.................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................AATCAGCCAGTATACTGCCCTT.......................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................CAATCGGCAAGTATACTGCCCTAT......................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGTAG................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................AATCAGCAAGTATACTGCCCTATATC...................................................................... 26 3 1 1.00 1 0 0 0 0 0 1 0
.................................................................................................................CAATCAGCAAGTATACTGCCCCT.......................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
......................................................................TTGGCAGTGTCTTAGCTGGTT....................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTTGTTGATC................................................................................................................... 24 3 2 1.00 2 0 0 0 0 0 2 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGTA.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0
.................................................................................................................CAATCAGCAAGTATACTGCCTT........................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................CAATCAGCAAGTATACTGCCCC........................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGTTAAGATC.............................................................................................................. 29 3 1 1.00 1 0 0 1 0 0 0 0
.........................................................................GCAGTGTCTTAGCTGGTTGTT.................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGTTA................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................................TGGCATTGTCTTAGCTGGTTGATC................................................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................................CAATCAGCAAGTATACTGCCC............................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGTTTTC................................................................................................................. 26 2 1 1.00 1 0 0 0 0 0 1 0
..................................................................................................................AATCAGCAAGTTTACTGCCCTA.......................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................TGGCAGTGTCTTATCTGGTTTTT.................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................TGGTAGTGTCTTAGCTGGTT....................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGTTTT.................................................................................................................. 25 1 1 1.00 1 0 0 0 0 1 0 0
.......................................................................TGGCAGTGTCTTAGCTTGTTGTT.................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................GGCAGTGTCTTAGCTGGTTGTTATC................................................................................................................. 25 2 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................................CAATCAGCAAGTATACTGCCCAA.......................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0
.......................................................................CGGCAGTGTCTTAGCTGGTTGT..................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGG..................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGTTTGT..................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................ATCAGCAAGTATACTGCCCTAGATC...................................................................... 25 2 1 1.00 1 0 0 0 0 0 1 0
.......................................................................TGGCAGTGTCTTAGTTGGTT....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................TAGCAGTGTCTTAGCTGGTTGTT.................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGTTAAA................................................................................................................. 26 3 1 1.00 1 0 0 0 1 0 0 0
.................................................................................................................CAATCAGCAAGTATACTGCCCTAA......................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGTTTTTT................................................................................................................ 27 3 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................CAATCAGCAAGTATACTGCCTTA.......................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................CATCAGCAAGTATACTGCCCTA.......................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0
.......................................................................TGGCAATGTCTTAGCTGGTTGATC................................................................................................................... 24 3 2 0.50 1 0 0 0 0 0 1 0
.......................................................................TGGCAGTGTCTTATCTGGTT....................................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTGGAA................................................................................................................... 24 3 2 0.50 1 0 1 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCGGGTTGTTT................................................................................................................... 24 2 2 0.50 1 1 0 0 0 0 0 0
........................................................................GGCAGTGTCTTAGCTGGTTGTATC.................................................................................................................. 24 3 2 0.50 1 0 0 0 0 0 1 0
.......................................................................TGGCAGTGTCTTATCTGGTTGATT................................................................................................................... 24 3 3 0.33 1 0 0 1 0 0 0 0
.......................................................................TGTCAGTGTCTTAGCTGGTT....................................................................................................................... 20 1 3 0.33 1 1 0 0 0 0 0 0
.......................................................................TGGCATTTTCTTAGCTGGTTGT..................................................................................................................... 22 2 4 0.25 1 1 0 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGTTAA..................................................................................................................... 22 2 4 0.25 1 0 1 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTTGTTTT..................................................................................................................... 22 2 4 0.25 1 1 0 0 0 0 0 0
.......................................................................TGGCAGTGCCTTAGCTGGTTGATC................................................................................................................... 24 3 4 0.25 1 0 0 0 0 0 1 0
.......................................................................TGGCAGTGTCTTAGCTTGT........................................................................................................................ 19 1 5 0.20 1 0 1 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGTT........................................................................................................................ 19 1 6 0.17 1 0 1 0 0 0 0 0
................................................................GGTTGTTTGGCAGTTTCTTAGCT........................................................................................................................... 23 3 12 0.08 1 1 0 0 0 0 0 0
.......................................................................TGGCAGTGTCTTAGCTGGAA....................................................................................................................... 20 2 20 0.05 1 0 1 0 0 0 0 0
.......................................................................AGGCAGTGTGTTAGCTGATTGT..................................................................................................................... 22 3 20 0.05 1 1 0 0 0 0 0 0

Anti-sense strand reads

CTCTCCGTCCTGTCCGGACAGGGGGCTCAGGGGAGGCCTACGGCACCTGGCCGGTCGACACTCACAAAGAAACCGTCACAGAATCGACCAACAACACTCGTTATCATTCCTTCGTTAGTCGTTCATATGACGGGATCTTCACGATGTGTAACACCCCGGACTCTCCCTTCTACTCCGCTCTCTACGGGTCTGGTCACCCTCTGCGGTCCT

***********************************************************.(((((((((((((..(((((((((((.((((((((((....((....)).....))))))))))))).))))))))..))))))))).))))..******************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116844

epididymis
.....................................CTACGGCACCCGGCCGG............................................................................................................................................................ 17 1 4 0.25 1 1

Generated: 09/01/2015 at 12:02 PM