ID:

mml-mir-346

 Coordinate:

chr9:48854528-48854613 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-52.2 -52.2 -52.1

Sense Strand Reads

GGCGGCGGTGACACAGACGAGTGAGCGTGTGGGAGGTCTCTGTGTTGGGCGTCTGTCTGCCCGCATGCCTGCCTCTCTGTTGCTCTGAAGGAGGCAGGGGCTGGGCCTGCAGCTGCCTGGGCAGAGCGGCTCCTGCGTGGGACATGGCTCTTCTCTCTGGTTACAGACTCACCACTTCGCTCCCAA

***********************************..((((((..((((((.((((..((((((...((((((((.((..........)))))))))).)).))))..)))).)))))).)))))).(((((((....))))....)))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116839

testes		 SRR116845

epididymis		 SRR116841

prostate
.....................................................TGTCTGCCCGCATGCCTGCCTCT.............................................................................................................. 23 0 1 32.00 32 31 1 0 0
.................................AGGTCTCTGTGTTGGGCGTC..................................................................................................................................... 20 0 1 2.00 2 2 0 0 0
.....................................................TGTCTGCCCGCATGCCTGCCTCA.............................................................................................................. 23 1 1 1.00 1 1 0 0 0
.....................................................TGTCTGCCCGCATGCCTGCC................................................................................................................. 20 0 1 1.00 1 1 0 0 0
.....................................................TGTCTGCCCGCATGCCTTCCTCTAT............................................................................................................ 25 2 1 1.00 1 0 1 0 0
.....................................................TGTCTGCCCGCATGCCTGCCTCTAA............................................................................................................ 25 2 1 1.00 1 1 0 0 0
.....................................................TGTCTGCCCGCATGCCTGCCTCTA............................................................................................................. 24 1 1 1.00 1 1 0 0 0
.....................................................TGTCTGCCCGCATGCCTGCCTCTAT............................................................................................................ 25 1 1 1.00 1 0 1 0 0
...................................................TCTGTCTGCCCGCATGCCTGCCATC.............................................................................................................. 25 3 2 0.50 1 0 0 1 0
.GCGGCGCTGACAGAGACG....................................................................................................................................................................... 18 2 16 0.06 1 0 0 0 1

Anti-sense strand reads

CCGCCGCCACTGTGTCTGCTCACTCGCACACCCTCCAGAGACACAACCCGCAGACAGACGGGCGTACGGACGGAGAGACAACGAGACTTCCTCCGTCCCCGACCCGGACGTCGACGGACCCGTCTCGCCGAGGACGCACCCTGTACCGAGAAGAGAGACCAATGTCTGAGTGGTGAAGCGAGGGTT

***********************************..((((((..((((((.((((..((((((...((((((((.((..........)))))))))).)).))))..)))).)))))).)))))).(((((((....))))....)))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:33 PM