ID:

mml-mir-33b

 Coordinate:

chr16:18447006-18447101 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-59.0 -58.6 -58.6

Sense Strand Reads

GGGCTGGACAGCTGCTCCTGGGCCGGTGGCGGGCGTGGGGGCCAAGAGAGGCGGGCGGCCCCGCGGTGCATTGCTGTTGCATTGCACGTGTGTGAGGCGGGTGCAGTGCCTCGGCAGTGCAGCCCGGAGCCGGCCCCTGGCACCGCGGGCCCCCATCCTGCCCCTCCCAGAGTTGGAGCCCTGGTGACCCTGCCCT

**************************************************..(((((((.(((.((((((((((((..(((((((((.(((.....))).)))))))))..)))))))))).))))).))).))))...********************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116840

epididymis		 SRR116842

seminal vesicle		 SRR116845

epididymis		 SRR116841

prostate		 SRR116844

epididymis		 SRR116839

testes
.................................................................GTGCATTGCTGTTGCATTGCA.............................................................................................................. 21 0 1 108.00 108 44 38 22 0 3 0 1
.................................................................GTGCATTGCTGTTGCATTGC............................................................................................................... 20 0 1 103.00 103 66 16 13 0 7 0 1
.................................................................GTGCATTGCTGTTGCATTGATC............................................................................................................. 22 2 2 25.00 50 0 0 0 34 0 16 0
.................................................................GTGCATTGCTGTTGCATTGCAA............................................................................................................. 22 1 1 8.00 8 4 1 3 0 0 0 0
.................................................................GTGCATTGCTGTTGCATTGA............................................................................................................... 20 1 1 7.00 7 2 3 1 0 0 0 1
.................................................................GTGCATTGCTGTTGCATTG................................................................................................................ 19 0 1 6.00 6 0 4 1 0 1 0 0
.................................................................GTGCATTGCTGTTGCATTGCATC............................................................................................................ 23 2 1 6.00 6 0 0 0 4 0 2 0
.................................................................GTGCATTGCTGTTGCATTTC............................................................................................................... 20 1 2 4.50 9 3 5 0 0 1 0 0
.................................................................GTGCATTGCTGTTTCATTGCA.............................................................................................................. 21 1 1 4.00 4 4 0 0 0 0 0 0
.................................................................GTGCATTGCTGTTGCATTGT............................................................................................................... 20 1 2 3.00 6 3 2 0 0 1 0 0
.......................................................................................................CAGTGCCTCGGCAGTGCAGCC........................................................................ 21 0 1 3.00 3 1 1 0 0 0 0 1
.................................................................GTGCATTGCTGTTGCATTTCA.............................................................................................................. 21 1 2 2.50 5 1 3 0 0 1 0 0
.................................................................GTGCATTGCTGTTGCATTGCC.............................................................................................................. 21 1 1 2.00 2 0 1 1 0 0 0 0
.................................................................GTGCATTGCTGTTTCATTGC............................................................................................................... 20 1 1 2.00 2 1 1 0 0 0 0 0
.................................................................GTGCATTGCTGTCGCATTGCA.............................................................................................................. 21 1 1 2.00 2 0 0 2 0 0 0 0
.................................................................GTGCATTGCTGTTGCATT................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................CAGCGTGCATTGCTGTTGCATTGCA.............................................................................................................. 25 3 1 1.00 1 0 1 0 0 0 0 0
.................................................................GTGTATTGCTGTTGCATTGC............................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0
.................................................................GTGCATTGCTGATGCATTGCA.............................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................GTGCATTGCTGTTGCATTGGTC............................................................................................................. 22 2 1 1.00 1 0 0 0 0 0 1 0
.................................................................GTGCATTGCTGTTGCATTCC............................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................GTGCGTTGCTGTTGCATTGC............................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................GTGCATTGCTGTTGCATCGCA.............................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................GTGCATTGCTGCTGCATTGC............................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................GTGCATTGCTGTTGCATTGCT.............................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................GTGCATTGCTTTTGCATTGCA.............................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................AAGTGCATTGCTGTTGCATTGCA.............................................................................................................. 23 2 2 1.00 2 1 1 0 0 0 0 0
.................................................................GTGCATTGCTGTTGCATTGAA.............................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................GTGCATTGCTGTTGCATTGCAATC........................................................................................................... 24 3 5 0.80 4 0 0 0 3 0 1 0
.................................................................GTGCATTGTTGTTGCATTGC............................................................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0
.................................................................GTGCATTGCAGTTGCATTGCA.............................................................................................................. 21 1 3 0.33 1 1 0 0 0 0 0 0
.................................................................GTGCATTGCAGTTGCATTGC............................................................................................................... 20 1 3 0.33 1 0 0 0 0 0 0 1
.................................................................GTGCATTGCTGTTGCATTGTAG............................................................................................................. 22 2 4 0.25 1 0 1 0 0 0 0 0
.................................................................GTGCATTGCTGTTGCCTTGCATC............................................................................................................ 23 3 4 0.25 1 0 0 0 0 0 1 0
.................................................................GTGCATTGCAGTTGCATTGCAA............................................................................................................. 22 2 4 0.25 1 1 0 0 0 0 0 0
.................................................................GTGCATTGCTGTTGCATC................................................................................................................. 18 1 5 0.20 1 0 0 0 0 0 1 0
.................................................................GTTCATTGCTGTTGCATTGCATC............................................................................................................ 23 3 7 0.14 1 0 0 0 0 0 1 0
.................................................................GTGCATTGCTGTTGCATTGATT............................................................................................................. 22 3 20 0.10 2 0 0 0 2 0 0 0
.................................................................GTGCATTGCTTTTGCATTTC............................................................................................................... 20 2 20 0.10 2 1 0 0 0 1 0 0
.................................................................GTGCATTGCTTTTGCATTTCA.............................................................................................................. 21 2 11 0.09 1 0 0 0 0 1 0 0
.................................................................GTGCATTGCTGCTGCATTGATC............................................................................................................. 22 3 20 0.05 1 0 0 0 1 0 0 0

Anti-sense strand reads

CCCGACCTGTCGACGAGGACCCGGCCACCGCCCGCACCCCCGGTTCTCTCCGCCCGCCGGGGCGCCACGTAACGACAACGTAACGTGCACACACTCCGCCCACGTCACGGAGCCGTCACGTCGGGCCTCGGCCGGGGACCGTGGCGCCCGGGGGTAGGACGGGGAGGGTCTCAACCTCGGGACCACTGGGACGGGA

*********************************************************..(((((((.(((.((((((((((((..(((((((((.(((.....))).)))))))))..)))))))))).))))).))).))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:12 PM