ID:

mml-mir-335

Coordinate:

chr3:169440244-169440331 +

Confidence:

Known

Class:

Unknown

Genomic Locale:

intergenic

[View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-39.4 -39.4 -38.9

Sense Strand Reads

TCATTTTATAGGTGAAGAACCTGAGAAACAGATTGGAAATGATTTATTTTGAGCGGGGGTCAAGAGCAATAACGAAAAATGTTTGTCATAAACCGTTTTTCATTATTGCTCCTGACCTCCTCTCATTTGCTATATTCAATTAAGTAAGTATACAATTTTCATTATGTTGGGTTGGGTTATTTCCAGTT

********************************************.....((((.((((((((.(((((((((.((((((((.((......)).)))))))).))))))))).)))))))).)))).......********************************************************
Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex
SRR116841

prostate
SRR116840

epididymis
SRR116842

seminal vesicle
SRR116845

epididymis
SRR116844

epididymis
SRR116839

testes
...........................................................TCAAGAGCAATAACGAAAAATG........................................................................................................... 22 0 1 5850.00 5850 4111 687 592 417 0 0 43
...........................................................TCAAGAGCAATAACGAAAAATGT.......................................................................................................... 23 0 1 2811.00 2811 1975 360 258 197 0 0 21
...........................................................TCAAGAGCAATAACGAAAAAT............................................................................................................ 21 0 1 845.00 845 567 121 94 57 0 0 6
...........................................................TCAAGAGCAATAACGAAAAATGTATC....................................................................................................... 26 2 1 259.00 259 0 0 0 0 202 57 0
...........................................................TCAAGAGCAATAACGAAAAATGA.......................................................................................................... 23 1 1 240.00 240 124 37 47 29 0 0 3
...............................................................................................TTTTTCATTATTGCTCCTGACCATC.................................................................... 25 2 1 155.00 155 0 0 0 0 121 34 0
...........................................................TCAAGAGCAATAACGAAAAATGATC........................................................................................................ 25 2 1 150.00 150 1 0 0 0 114 35 0
...........................................................TCAAGAGCAATAACGAAAAA............................................................................................................. 20 0 1 127.00 127 83 11 14 19 0 0 0
..............................................................................................GTTTTTCATTATTGCTCCTGACCATC.................................................................... 26 2 1 117.00 117 0 0 0 0 106 11 0
...........................................................TCAAGAGCAATAACGAAAA.............................................................................................................. 19 0 1 105.00 105 60 15 16 12 0 0 2
...........................................................TCAAGAGCAATAACGAAAAATATC......................................................................................................... 24 2 1 45.00 45 0 0 0 0 29 16 0
...........................................................TCAAGAGCAATAACGAAAAATA........................................................................................................... 22 1 1 39.00 39 21 11 3 4 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATT........................................................................................................... 22 1 1 29.00 29 19 7 3 0 0 0 0
.............................................................AAGAGCAATAACGAAAAATG........................................................................................................... 20 0 1 26.00 26 12 5 4 5 0 0 0
...........................................................TCAAGAGCAATCACGAAAAATG........................................................................................................... 22 1 1 24.00 24 24 0 0 0 0 0 0
...............................................................................................TTTTTCATTATTGCTCCTGACC....................................................................... 22 0 1 21.00 21 17 0 1 3 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATGAA......................................................................................................... 24 2 1 21.00 21 16 1 4 0 0 0 0
...........................................................TCAAGAGCAATAACGACAAATG........................................................................................................... 22 1 1 20.00 20 12 5 2 1 0 0 0
...........................................................TCAAGAGCAATAACGAAA............................................................................................................... 18 0 1 20.00 20 8 5 4 2 0 0 1
...........................................................TCAAGAGCAATGACGAAAAATG........................................................................................................... 22 1 1 16.00 16 15 0 1 0 0 0 0
.............................................................AAGAGCAATAACGAAAAATGT.......................................................................................................... 21 0 1 16.00 16 9 5 0 1 0 0 1
...........................................................TCAAGAGCAATAACGAAAAATGTT......................................................................................................... 24 0 1 14.00 14 7 4 2 1 0 0 0
...........................................................TCAAGAGCAATAACGAAAAAAG........................................................................................................... 22 1 1 14.00 14 11 2 0 1 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATGTA......................................................................................................... 24 1 1 14.00 14 7 2 2 1 2 0 0
...........................................................TCAAGAGCAATGACGAAAAATGT.......................................................................................................... 23 1 1 12.00 12 12 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAAA............................................................................................................ 21 1 1 12.00 12 6 1 3 2 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATGTAA........................................................................................................ 25 2 1 10.00 10 6 3 1 0 0 0 0
...........................................................TCAAGAGCAATAACGAAACATG........................................................................................................... 22 1 1 10.00 10 8 2 0 0 0 0 0
...........................................................TCAAGAGCAATCACGAAAAATGT.......................................................................................................... 23 1 1 9.00 9 9 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGACAAATGT.......................................................................................................... 23 1 1 9.00 9 6 2 1 0 0 0 0
...........................................................TCAATAGCAATAACGAAAAATG........................................................................................................... 22 1 1 8.00 8 6 1 1 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATTT.......................................................................................................... 23 1 1 8.00 8 5 1 2 0 0 0 0
...............................................................................................TTTTTCATTATTGCTCCTTACC....................................................................... 22 1 1 8.00 8 7 1 0 0 0 0 0
..............................................................................................GTTTTTCATTATTGCTCCTGACTATC.................................................................... 26 3 1 7.00 7 0 0 0 0 7 0 0
...........................................................TCAAGAGCAATAACGAAAAATGAATC....................................................................................................... 26 3 1 7.00 7 0 0 0 0 6 1 0
...........................................................TCAAGAGCAATAACGAA................................................................................................................ 17 0 1 7.00 7 2 3 1 1 0 0 0
..........................................................GTCAAGAGCAATAACGAAAAAT............................................................................................................ 22 0 1 6.00 6 4 2 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATAA.......................................................................................................... 23 2 1 6.00 6 4 1 1 0 0 0 0
...........................................................TCAAGAGCAAAAACGAAAAATG........................................................................................................... 22 1 1 6.00 6 4 1 0 1 0 0 0
...........................................................TCAAGAGCAATAACTAAAAATG........................................................................................................... 22 1 2 5.50 11 7 0 3 1 0 0 0
...........................................................TCAAGAGCAATAATGAAAAATG........................................................................................................... 22 1 2 5.50 11 7 2 1 1 0 0 0
..............................................................................................GTTTTTCATTATTGCTCCTGACATC..................................................................... 25 1 1 5.00 5 0 0 0 0 3 2 0
...........................................................TCAAAAGCAATAACGAAAAATG........................................................................................................... 22 1 1 5.00 5 4 1 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATGC.......................................................................................................... 23 1 1 5.00 5 4 0 1 0 0 0 0
...........................................................CCAAGAGCAATAACGAAAAATG........................................................................................................... 22 1 1 5.00 5 4 0 1 0 0 0 0
...........................................................TCAAGAGCAATTACGAAAAATG........................................................................................................... 22 1 1 5.00 5 5 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAACATGT.......................................................................................................... 23 1 1 5.00 5 5 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAGAAATG........................................................................................................... 22 1 1 5.00 5 3 1 0 1 0 0 0
..............................................................................................GTTTTTCATTATTGCTCCTGACC....................................................................... 23 0 1 5.00 5 4 0 0 0 0 0 1
...........................................................TCAATAGCAATAACGAAAAATGT.......................................................................................................... 23 1 1 5.00 5 5 0 0 0 0 0 0
...........................................................TCAGGAGCAATAACGAAAAATG........................................................................................................... 22 1 1 5.00 5 4 0 1 0 0 0 0
...........................................................TCAAGAGCAATAACGAACAATG........................................................................................................... 22 1 1 4.00 4 3 1 0 0 0 0 0
............................................................CAAGAGCAATAACGAAAAATG........................................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACAAAAAATGT.......................................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0
...........................................................TTAAGAGCAATAACGAAAAATG........................................................................................................... 22 1 1 4.00 4 3 1 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAACAATGATC........................................................................................................ 25 3 1 4.00 4 0 0 0 0 2 2 0
...........................................................TCAAGAGCAATAACGACAAAT............................................................................................................ 21 1 1 4.00 4 4 0 0 0 0 0 0
...........................................................TCCAGAGCAATAACGAAAAATG........................................................................................................... 22 1 1 4.00 4 3 1 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAACAATGT.......................................................................................................... 23 1 1 4.00 4 2 0 0 2 0 0 0
...........................................................TCAGGAGCAATAACGAAAAATGT.......................................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0
...............................................................................................TTTTTCATTATTGCTCCTGACCCTC.................................................................... 25 2 1 4.00 4 0 0 0 0 2 2 0
...........................................................TCAAGAGCAATCACGAAAAATGTATC....................................................................................................... 26 3 1 3.00 3 0 0 0 0 3 0 0
...........................................................TCAAGAGCAAGAACGAAAAATG........................................................................................................... 22 1 1 3.00 3 2 0 0 0 0 0 1
...........................................................TCAAGCGCAATAACGAAAAATG........................................................................................................... 22 1 1 3.00 3 2 0 0 0 0 0 1
.........................................................AATCAAGAGCAATAACGAAAAATGT.......................................................................................................... 25 2 1 3.00 3 2 1 0 0 0 0 0
...........................................................TCAAGATCAATAACGAAAAATGT.......................................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAGATG........................................................................................................... 22 1 1 3.00 3 2 1 0 0 0 0 0
...........................................................TCAACAGCAATAACGAAAAATG........................................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0
...............................................................................................TTTTTCATTATTTCTCCTGACC....................................................................... 22 1 1 3.00 3 2 1 0 0 0 0 0
...........................................................TCAAGATCAATAACGAAAAATG........................................................................................................... 22 1 1 3.00 3 2 0 1 0 0 0 0
...........................................................TCGAGAGCAATAACGAAAAATG........................................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0
..............................................................................................GTTTTTCATTATTGCTCCTGACAATC.................................................................... 26 3 1 3.00 3 0 0 0 0 2 1 0
............................................................CAAGAGCAATAACGAAAAATGTATC....................................................................................................... 25 2 1 3.00 3 0 0 0 0 3 0 0
...........................................................TCAAGACCAATAACGAAAAATG........................................................................................................... 22 1 1 3.00 3 2 0 1 0 0 0 0
...........................................................TCAAGAACAATAACGAAAAATG........................................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAACTG........................................................................................................... 22 1 1 3.00 3 0 0 3 0 0 0 0
...........................................................TCAAGGGCAATAACGAAAAATG........................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
..............................................................................................GTTTTTCATTATTGCTCCTGACA....................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0
...........................................................TCAAGAGCAATAGCGAAAAATG........................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACAAAAAATG........................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
...........................................................TCAAGAGCGATAACGAAAAATG........................................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0
...........................................................TCAAGAGCATTAACGAAAAATGT.......................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATGTTATC...................................................................................................... 27 3 1 2.00 2 0 0 0 0 1 1 0
...........................................................TCAAGAGCAATAACGAAACATGATC........................................................................................................ 25 3 1 2.00 2 0 0 0 0 1 1 0
...........................................................TCAAGAGCAATCACGAAAAAT............................................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATGGATC....................................................................................................... 26 3 1 2.00 2 0 0 0 0 2 0 0
...........................................................TCAAGAGCAATAACGAGAAATGT.......................................................................................................... 23 1 1 2.00 2 1 0 0 1 0 0 0
...........................................................TCAAGAGCAATAACGAACAAT............................................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAAG............................................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0
............................................................CAAGAGCAATAACGAAAAATGT.......................................................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0
...........................................................TCAAGATCAATAACGAAAAATGATC........................................................................................................ 25 3 1 2.00 2 0 0 0 0 1 1 0
...........................................................TCAAGAACAATAACGAAAAAT............................................................................................................ 21 1 1 2.00 2 1 0 1 0 0 0 0
.............................................................AAGAGCAATAACGAAAAATGATC........................................................................................................ 23 2 1 2.00 2 0 0 0 0 0 2 0
...........................................................TCAAGAGCACTAACGAAAAAT............................................................................................................ 21 1 1 2.00 2 1 1 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAACATGTATC....................................................................................................... 26 3 1 2.00 2 0 0 0 0 2 0 0
...........................................................TCAAGAGCATTAACGAAAAATG........................................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0
...........................................................TCAAGAGAAATAACGAAAAATG........................................................................................................... 22 1 1 2.00 2 1 0 1 0 0 0 0
...........................................................TCAAGAGCAATAAAGAAAAAT............................................................................................................ 21 1 1 2.00 2 1 1 0 0 0 0 0
...........................................................TCCAGAGCAATAACGAAAAATGT.......................................................................................................... 23 1 1 2.00 2 1 0 0 1 0 0 0
...........................................................TCAAGAGCAATAACGAATAATG........................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
...........................................................TCAAGAGCACTAACGAAAAATGT.......................................................................................................... 23 1 1 2.00 2 1 0 1 0 0 0 0
...........................................................TCAAGAGCAATAACGACAAATGTATC....................................................................................................... 26 3 1 2.00 2 0 0 0 0 2 0 0
...........................................................TCAAGAGCAATTACGAAAAAT............................................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGTAAAATG........................................................................................................... 22 1 1 2.00 2 1 0 0 1 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATGGT......................................................................................................... 24 1 1 2.00 2 2 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATAT.......................................................................................................... 23 1 1 2.00 2 1 0 0 0 1 0 0
...........................................................TCAAGAGCAATAACGACAAATGA.......................................................................................................... 23 2 2 1.50 3 1 2 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAAAGA.......................................................................................................... 23 2 2 1.50 3 2 1 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATGCATC....................................................................................................... 26 3 2 1.50 3 0 0 0 0 2 1 0
...........................................................TCAAGAGCAATAACGAAAAT............................................................................................................. 20 1 3 1.33 4 2 0 1 1 0 0 0
...........................................................TCAAGAGTAATAACGAAAAATG........................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
...........................................................TCGAGAGCAATAACGAAAAATGTATC....................................................................................................... 26 3 1 1.00 1 0 0 0 0 1 0 0
...........................................................ACAAGAGCAATAACGAAAAATGT.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCGAGAGCAATAACGAAAAATGT.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................CTCAAGAGCAATAACGAAAAATG........................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TAAAGAGCAATAACGAAAAATG........................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................TCAAGAGCACTAACGACAAATGT.......................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAATAGCACTAACGAAAAATG........................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAACG........................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAACTGT.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCGATAACGAAAAATGTATC....................................................................................................... 26 3 1 1.00 1 0 0 0 0 1 0 0
...........................................................TCAAGAGCAATAACGAAAGATGT.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGGAAAATG........................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................GTTTTTTATTATTGCTCCTGACCATC.................................................................... 26 3 1 1.00 1 0 0 0 0 1 0 0
.............................................................AAGAGCAATAACGAAAAA............................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATAATC........................................................................................................ 25 3 1 1.00 1 0 0 0 0 1 0 0
.................................................................................................TTTCATTATTGCTCCTGACC....................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0
...........................................................TCCAGAGCAATAACGAAAAAT............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACTAAAAAT............................................................................................................ 21 1 2 1.00 2 0 2 0 0 0 0 0
...........................................................GCAAGAGCAATAACGAAAAATG........................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................GTTTTTCATTATTGCTCCTTACCATC.................................................................... 26 3 1 1.00 1 0 0 0 0 1 0 0
...........................................................TCAAGAGCAATAACGAAAAATGG.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAACTGTATC....................................................................................................... 26 3 1 1.00 1 0 0 0 0 1 0 0
...........................................................TCAAGAGCGATAACGAAAAAT............................................................................................................ 21 1 1 1.00 1 0 0 0 1 0 0 0
.........................................................AATCAAGAGCAATAACGAAAAATG........................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAACGAATG....................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCACGAGCAATGACGAAAAATG........................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAGCGAAAAATGT.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................TTTTTCATTATTGCTCCTGACT....................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................TTTTTCATTATTGCTCCTGACA....................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATC........................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATGTATCT...................................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0 0
..........................................................CTCAAGAGCAATAACGAAAAATGT.......................................................................................................... 24 1 1 1.00 1 0 0 0 1 0 0 0
...........................................................TCAAGAGCAATCACGAAACATGT.......................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCACTAACGACAAATG........................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAACGT.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
................................................................................................TTTTCATTATTGCTCCTGACCACC.................................................................... 24 1 1 1.00 1 0 0 0 0 0 1 0
.............................................................AAGAGCAATAACGAAAAAT............................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAAGAACGAAAAATGT.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGGAATAACGAAAAATG........................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAATGAAAAATGT.......................................................................................................... 23 1 2 1.00 2 2 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGACACATG........................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................AAGAGCAATAACGAAAAATGTATC....................................................................................................... 24 2 2 1.00 2 0 0 0 0 2 0 0
...........................................................TCAAGAGCAATAACGAAAAGTGT.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................ACAAGAGCAATAACGAAAAAT............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCACTAACGAAAAATGCTC........................................................................................................ 25 3 1 1.00 1 0 0 0 0 1 0 0
...........................................................TCAAGAGCAATAATGAAAAATGTATC....................................................................................................... 26 3 1 1.00 1 0 0 0 0 0 1 0
...........................................................TCAAGAGCAATAACGAAAAATGCTC........................................................................................................ 25 2 1 1.00 1 0 0 0 0 1 0 0
...........................................................TCAAGAGCAATAACCAAAAATG........................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATGTAGC....................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAGAATGA.......................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................TTTTTCATTATTGCTCCTGACTATC.................................................................... 25 3 2 1.00 2 0 0 0 0 2 0 0
...........................................................TCAAGAGCAATAACGAAAACTGATC........................................................................................................ 25 3 2 1.00 2 0 0 0 0 2 0 0
...........................................................TCAAGACCAATAACGAAAAATGATC........................................................................................................ 25 3 1 1.00 1 0 0 0 0 1 0 0
...............................................................................................TTTTTCATTCTTGCTCCTGACCATC.................................................................... 25 3 1 1.00 1 0 0 0 0 0 1 0
...........................................................TCAAGAGCAATAACGAAAATTG........................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAACCATGT.......................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGCAAAATGATC........................................................................................................ 25 3 1 1.00 1 0 0 0 0 1 0 0
...........................................................TCAAGAGCAATTACGAAAAATGT.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAGAATG........................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
...............................................................................................TTTTTCATTATTGCTCCTGACATC..................................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0
...........................................................CCAAGAGCAATAACGAAAAAT............................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................TCAAGAGCCATAACGAAAAATT........................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATGTTCAT...................................................................................................... 27 2 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGTGCAATAACGAAAAATG........................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................TTTTTCATTATTGCTCCTTACCATC.................................................................... 25 3 1 1.00 1 0 0 0 0 1 0 0
...........................................................TCAAGAGCAATAACGAAAAATGAAT........................................................................................................ 25 2 1 1.00 1 0 0 0 0 1 0 0
...........................................................TCAAGAGCAATAACGAAAAATGTTTGT...................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGCGCAATAACGAAAAATGA.......................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 1
...........................................................TGAAGAGCAATAACGAAAAATG........................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAGAGATG........................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................GTTTTTCATTATTGCTCCTGACG....................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TTAAGAGCAATAACGAAAAATGT.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................GCGGTCAAGAGCAATAACGAAAAATGT.......................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGGGCAATAACGAAAAAT............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
............................................................CAAGAGCAATAACGAAAAATGTT......................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCCAGAGCAATAACGAAAAATGA.......................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAACT............................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAACAATAACGAAAAATGT.......................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................TCAAGAGCAACAACGACAAATG........................................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATGTTAT....................................................................................................... 26 2 1 1.00 1 0 0 0 0 0 1 0
..............................................................................................GTTTTTCATTATTTCTCCTGACC....................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
...........................................................TCAAGAGCAGTAACGAAAAATGT.......................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................TCAAGAGCACTAACGAAAAATG........................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................TCACGAGCAATAACGCAAAATG........................................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
...........................................................TCAAGAGCAATAACGCAAAATG........................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATGTAAATC..................................................................................................... 28 3 1 1.00 1 0 0 0 0 1 0 0
...........................................................TCAAGAGCAATAAAGAAAAATG........................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0
...........................................................TCAAGAGCAACAACGAAAAATGT.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGTAATAACGAAAAATGT.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCCATAACGAAAAATG........................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATGAT......................................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0
.......................................................CGACTCAAGAGCAATAACGAAAAATG........................................................................................................... 26 3 1 1.00 1 1 0 0 0 0 0 0
...........................................................TAAAGAGCAATAACGAAAAATGT.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATGACGAAAAA............................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAGTG........................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................GTTTTTCATTATTGCTCCTTACC....................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATGAAA........................................................................................................ 25 3 2 1.00 2 2 0 0 0 0 0 0
.............................................................AAGAGCAATAACGAAAAATGA.......................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0
.............................................................AAGAGCAATAACGAAACATG........................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
......................................................AGGCTTCAAGAGCAATAACGAAAAATG........................................................................................................... 27 3 1 1.00 1 0 0 1 0 0 0 0
.............................................................AAGAGCAATAACGAAAAATGTC......................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGAAATAACGAAAAATGT.......................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
.........................................................AATCAAGAGCAATAACGAGAAATGT.......................................................................................................... 25 3 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAACAGCAATAACGAAAAATGT.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGACACATGT.......................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
.........................................................GTTCAAGAGCAATAACGAAAAAT............................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0
............................................................CAAGAGCAATAACGAAAAATGATC........................................................................................................ 24 2 1 1.00 1 0 0 0 0 0 1 0
...............................................................................................TCTTTCATTATTGCTCCTGACCATC.................................................................... 25 3 1 1.00 1 0 0 0 0 0 1 0
...........................................................TCAAGAGCAATAACTAAAAATGT.......................................................................................................... 23 1 2 1.00 2 1 0 0 1 0 0 0
...........................................................TCAAGAGCAATAACGCAAAATGT.......................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................TCAAGAGCAATAACGACAAATGC.......................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................GTTTTTCATTATTGCTCCTGACT....................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
.............................................................AAGAGCAATAACGAAAAATGTT......................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0
...............................................................................................TTTTTCATTATTGCTCCTGAC........................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATGCC......................................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAACGA.......................................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0
...........................................................TCAAGAGCAATAACGAAGAATGTCC........................................................................................................ 25 3 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAATAA............................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGATAAATGT.......................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................TCATGAGCAATAACGAAAAATG........................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................TTTTTCATTATTGCTCCTGACAATC.................................................................... 25 3 3 0.67 2 0 0 0 0 2 0 0
...........................................................TCAAGAGCAATAACGAAAAAATC.......................................................................................................... 23 3 9 0.56 5 0 0 0 0 4 1 0
...........................................................TCAAGAGCAATAACGAACAATATC......................................................................................................... 24 3 2 0.50 1 0 0 0 0 0 1 0
...........................................................TCAAGAGCAATACCGAAAAATG........................................................................................................... 22 1 2 0.50 1 0 1 0 0 0 0 0
...........................................................TCAGGAGCAATAACGAAAAATGTATC....................................................................................................... 26 3 2 0.50 1 0 0 0 0 1 0 0
..............................................................................................TTTTTTCATTATTGCTCCTGACCATC.................................................................... 26 3 2 0.50 1 0 0 0 0 1 0 0
...........................................................TGAAGAGCAATAACGAAAAA............................................................................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0
...........................................................TCAAAAGCAATAACGAAAAAT............................................................................................................ 21 1 2 0.50 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATACCGAAAAATGT.......................................................................................................... 23 1 2 0.50 1 1 0 0 0 0 0 0
.................................................................................................TTTCATTATTGCTCCTTACC....................................................................... 20 1 2 0.50 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACAAAAAATGATC........................................................................................................ 25 3 6 0.50 3 0 0 0 0 3 0 0
...........................................................TCAAGAGCAATACCGAAAAATGATC........................................................................................................ 25 3 2 0.50 1 0 0 0 0 0 1 0
...........................................................TCCAGAGCAATAACGAAACATG........................................................................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAATA............................................................................................................. 20 1 2 0.50 1 0 1 0 0 0 0 0
..............................................................................................GTTTTTCATTATTGCTCCTGCCCATC.................................................................... 26 3 2 0.50 1 0 0 0 0 1 0 0
...........................................................TCAAGAGCAATAACGAATAATGA.......................................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACTAAAAATGTATC....................................................................................................... 26 3 2 0.50 1 0 0 0 0 1 0 0
...........................................................TCAATAGCAATAACGCAAAATG........................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAACAACGAAAAATGG.......................................................................................................... 23 2 2 0.50 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATACCGACAAAT............................................................................................................ 21 2 2 0.50 1 1 0 0 0 0 0 0
...........................................................TCGAGAGCAATAACGAAAAATA........................................................................................................... 22 2 2 0.50 1 0 0 1 0 0 0 0
...........................................................TCAAGAGCAATAACGGAAAATGA.......................................................................................................... 23 2 2 0.50 1 0 1 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAG............................................................................................................. 20 1 2 0.50 1 0 0 1 0 0 0 0
...........................................................TCAAGAGCATTAACGAAAAA............................................................................................................. 20 1 2 0.50 1 1 0 0 0 0 0 0
.......................................TGATTTATTTTGAGCGGGGGATC.............................................................................................................................. 23 3 5 0.40 2 0 0 0 0 0 2 0
...........................................................TCAAGAGCAATAACGATA............................................................................................................... 18 1 5 0.40 2 0 0 2 0 0 0 0
...........................................................TCAAGAGCAATAATGAAAAATTT.......................................................................................................... 23 2 3 0.33 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCACTAACGACACATG........................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0
.............................................................AAGAGCAATAACGAAAAATT........................................................................................................... 20 1 3 0.33 1 0 1 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAAAGG.......................................................................................................... 23 2 3 0.33 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAACATGTAA........................................................................................................ 25 3 3 0.33 1 1 0 0 0 0 0 0
...........................................................TCAGGAGCAATAACGAAAAA............................................................................................................. 20 1 3 0.33 1 1 0 0 0 0 0 0
..................................................................................................TTCATTATTGCTCCTGACCATC.................................................................... 22 2 3 0.33 1 0 0 0 0 0 1 0
...........................................................TCAAGAGCAATAATGAAAAAT............................................................................................................ 21 1 3 0.33 1 0 0 0 1 0 0 0
...........................................................TCAATAGCAATAACGAAAAA............................................................................................................. 20 1 3 0.33 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAGCGACACATGT.......................................................................................................... 23 3 3 0.33 1 1 0 0 0 0 0 0
........................................................ATGTCAAGAGCAATAACGAAAA.............................................................................................................. 22 2 3 0.33 1 1 0 0 0 0 0 0
...........................................................TCAATAGCAATAACGATAAATGT.......................................................................................................... 23 2 3 0.33 1 0 0 0 1 0 0 0
...........................................................TCAAGAGCAATAACGAAAAATTA.......................................................................................................... 23 2 3 0.33 1 0 1 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAAAAA........................................................................................................... 22 2 7 0.29 2 1 0 1 0 0 0 0
...........................................................TCAAGAGCAATAACGAAATGT............................................................................................................ 21 2 4 0.25 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGACACATGA.......................................................................................................... 23 3 4 0.25 1 0 0 1 0 0 0 0
...............................................................................................TTTTTTATTATTGCTCCTGACCATC.................................................................... 25 3 4 0.25 1 0 0 0 0 0 1 0
...........................................................TCAAGAGCAATAACGAAAT.............................................................................................................. 19 1 4 0.25 1 1 0 0 0 0 0 0
...........................................................TCAATAGCAATAACGAGAAAT............................................................................................................ 21 2 4 0.25 1 1 0 0 0 0 0 0
...........................................................ACAAGAGCAATAACGAAGAAT............................................................................................................ 21 2 4 0.25 1 0 0 1 0 0 0 0
...........................................................TCAAGAGCAATCACGACAAATG........................................................................................................... 22 2 4 0.25 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACGAAAATG............................................................................................................ 21 2 14 0.21 3 2 0 0 1 0 0 0
...........................................................TCAAGAGGAATAACGAAAAA............................................................................................................. 20 1 5 0.20 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCACTCACGACAAATGT.......................................................................................................... 23 3 5 0.20 1 1 0 0 0 0 0 0
...............................................................................................TTTTTCATTATTGCTCCTGATCATC.................................................................... 25 3 5 0.20 1 0 0 0 0 1 0 0
...........................................................TCAAGAGCTATAACGAAA............................................................................................................... 18 1 5 0.20 1 0 0 0 0 0 0 1
...........................................................TCAAGAGCAATAACGAAATG............................................................................................................. 20 2 10 0.20 2 2 0 0 0 0 0 0
.............................................................AAGAGCAATAACGAAAAATGAATC....................................................................................................... 24 3 6 0.17 1 0 0 0 0 1 0 0
...........................................................TCAAGAGCAATAACGAAAAAATGT......................................................................................................... 24 3 7 0.14 1 0 0 1 0 0 0 0
.........................................................ATTCAAGAGCAATAACGAAAA.............................................................................................................. 21 2 7 0.14 1 1 0 0 0 0 0 0
...........................................................TCGGGAGCAATAACGAAAA.............................................................................................................. 19 2 8 0.13 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAACAAAAA.............................................................................................................. 19 1 15 0.07 1 0 1 0 0 0 0 0
...........................................................TCAAGAGCAATAAAGAAAAATT........................................................................................................... 22 2 20 0.05 1 1 0 0 0 0 0 0
...........................................................ACAATAGCAATAACGAAAAAT............................................................................................................ 21 2 20 0.05 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAAAGAAAAAAG........................................................................................................... 22 2 20 0.05 1 1 0 0 0 0 0 0
...........................................................TCAAGAGCAATAAAGAAAA.............................................................................................................. 19 1 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

AGTAAAATATCCACTTCTTGGACTCTTTGTCTAACCTTTACTAAATAAAACTCGCCCCCAGTTCTCGTTATTGCTTTTTACAAACAGTATTTGGCAAAAAGTAATAACGAGGACTGGAGGAGAGTAAACGATATAAGTTAATTCATTCATATGTTAAAAGTAATACAACCCAACCCAATAAAGGTCAA

********************************************************.....((((.((((((((.(((((((((.((((((((.((......)).)))))))).))))))))).)))))))).)))).......********************************************
Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex
...............................................................................................AAAAAGCAATAACGAGGACT......................................................................... 20 1 3 0.33 1 1
................................................................................................AAAAGCAATAACGAGGGCT......................................................................... 19 2 8 0.13 1 1

Generated: 09/01/2015 at 12:22 PM