ID:

mml-mir-331

 Coordinate:

chr11:97055366-97055459 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.7 -42.3 -42.1

Sense Strand Reads

CATATGAGTGAAAAGCCCAGAAGTCGACCTGAGCTGAAAGCACTCCCAAGGAGTTTGGTTTTGTTTGGGTTTGTTCTAGGTATGGTCCCAGGGATCCCAGATCAAACCAGGCCCCTGGGCCTATCCTAGAACCAACCTAAACTCGCGCATCATTCCTGGAACATCAAGAGTGTGAAGACTGAAGATTACCTGAG

***********************************************************...(((((((((.((((((((.((((.(((((((...((...........)).))))))).)))))))))))).)))))))))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR116843

cortex		 SRR116845

epididymis		 SRR116841

prostate		 SRR116844

epididymis		 SRR116842

seminal vesicle		 SRR116840

epididymis		 SRR116839

testes
..............................................................................................................GCCCCTGGGCCTATCCTAGAA............................................................... 21 0 1 49.00 49 23 0 17 0 5 3 1
..........................................................................TCTAGGTATGGTCCCAGGGATCATC............................................................................................... 25 3 1 19.00 19 0 14 0 5 0 0 0
..............................................................................................................GCCCCTGGGCCTATCCTAGAAT.............................................................. 22 1 1 18.00 18 11 0 3 0 1 3 0
..........................................................................TCTAGGTATGGTCCCAGGGATCCATC.............................................................................................. 26 3 1 18.00 18 0 7 0 11 0 0 0
..............................................................................................................GCCCCTGGGCCTATCCTAGA................................................................ 20 0 1 16.00 16 11 0 1 0 2 2 0
..............................................................................................................GCCCCTGGGCCTATCCTAGAAATC............................................................ 24 3 2 13.50 27 0 21 0 6 0 0 0
..............................................................................................................GCCCCTGGGCCTATCCTAGAATC............................................................. 23 1 1 13.00 13 0 6 0 7 0 0 0
..........................................................................TCTAGGTATGGTCCCAGGGAT................................................................................................... 21 0 1 12.00 12 5 0 1 0 3 3 0
..............................................................................................................GCCCCTGGGCCTATCCTAGAAA.............................................................. 22 1 1 9.00 9 5 0 2 0 1 1 0
..............................................................................................................GCCCCTGGGCCTATCCTAGAACATC........................................................... 25 3 1 9.00 9 0 6 0 3 0 0 0
..........................................................................TCTAGGTATGGTCCCAGGGATATC................................................................................................ 24 2 1 7.00 7 0 5 0 2 0 0 0
..............................................................................................................GCCCCTGGGCCTATCCTAGAC............................................................... 21 1 1 5.00 5 2 0 2 0 0 1 0
........................................................GGTTTTGTTTGGGTTTGTT....................................................................................................................... 19 0 3 4.00 12 4 0 5 0 1 2 0
..............................................................................................................GCCCCTGGGCCTATCCTAGAAC.............................................................. 22 0 1 4.00 4 3 0 0 0 1 0 0
..........................................................................TCTAGGTATGGTCCCAGGGATA.................................................................................................. 22 1 1 4.00 4 2 0 1 0 1 0 0
..........................................................................TCTAGGTATGGTCCCAGGGATC.................................................................................................. 22 0 1 3.00 3 2 0 0 0 0 1 0
..............................................................................................................GCCCCTGGGCCTATCCTAGACA.............................................................. 22 2 2 2.50 5 4 0 0 0 1 0 0
.........................................................................TTCTAGGTATGGTCCCAGGGAT................................................................................................... 22 0 1 2.00 2 1 0 0 0 1 0 0
..............................................................................................................GCCCCTGGGCCTATCCTAGAT............................................................... 21 1 1 2.00 2 1 0 1 0 0 0 0
..............................................................................................................GCCCCTGGGCCTATCCTAGAAATATC.......................................................... 26 3 1 2.00 2 0 2 0 0 0 0 0
...........................................................................CTAGGTATGGTCCCAGGGATATC................................................................................................ 23 2 1 2.00 2 0 1 0 1 0 0 0
..........................................................................TCTAGGTATGGTCCCAGGGAA................................................................................................... 21 1 1 2.00 2 1 0 1 0 0 0 0
.......................................................TGGTTTTGTTTGGGTTTGTTATC.................................................................................................................... 23 2 2 1.50 3 0 3 0 0 0 0 0
..............................................................................................................GCCCCTGGGCCTATCCTAGACT.............................................................. 22 2 2 1.50 3 2 0 0 0 1 0 0
...............................................................................................................CCCCTGGGCCTATCCTAGAACA............................................................. 22 1 1 1.00 1 0 0 0 0 0 1 0
..........................................................................TCTAGGTATGGTCCCAGGGA.................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0
..............................................................................................................GCCCCTGGGCCTATCCTAGTA............................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................GCCCCTGGGCCTATCCTAGAACTC............................................................ 24 2 1 1.00 1 0 1 0 0 0 0 0
...........................................................................CTAGGTATGGTCCCAGGGAT................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................CCCCTGGGCCTATCCTAGAATTA............................................................ 23 2 1 1.00 1 0 0 0 0 1 0 0
..........................................................................TCTAGGTATGGTCCCAGGGATCCA................................................................................................ 24 1 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................................GCCCCTGGGCCTATCCTAGAAAA............................................................. 23 2 1 1.00 1 0 0 1 0 0 0 0
...............................................................................................................CCCCTGGGCCTATCCTAGA................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................CCCCTGGGCCTATCCTAGAACT............................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0
..........................................................................TCTAGGTATGGTCCCAGGGATCCAA............................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0
.........................................................................TTCTAGGTATGGTCCCAGGGATATC................................................................................................ 25 2 1 1.00 1 0 0 0 1 0 0 0
.....................................................TTTGGTTTTGTTTGGGTTTGTTATC.................................................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0
..........................................................................TCTAGGTATGGTCCCAGGGATCCTC............................................................................................... 25 2 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................GCCCGTGGGCCTATCCTAGA................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................TCTAGGCATGGTCCCAGGGATCCCATATC........................................................................................... 29 2 1 1.00 1 0 1 0 0 0 0 0
..........................................................................TCTAGGTATGGTCCCAGGGATCAGA............................................................................................... 25 2 1 1.00 1 0 0 0 0 1 0 0
..........................................................................TCTAGGTATGGTCCCAGGGAATC................................................................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................GCCCCTGTGCCTATCCTAGAA............................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................CCCCTGGGCCTATCCTAGAA............................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................GCCCCTGGGCCTATCCTAGCAC.............................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................TCTAGGTATGGTCCCAGGGAAT.................................................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0
..........................................................................TCTAGGTATGGTCCTAGGGAT................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
...............................................................................................................CCCCTGGGCCTATCCTAGAATT............................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0
.........................................................................TTCTAGGTATGGTCCCAGTGAT................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................................CTAGGTATGGTCCCAGGGA.................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0
.........................................................................TTCTAGGTATTGTCCCAGGGAT................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................CCCCTGGGCCTATCCTAGAATC............................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0
..........................................................................TCTAGATATGGTCCCAGGGATT.................................................................................................. 22 2 1 1.00 1 0 0 0 0 1 0 0
...........................................................................TTAGGTATGGTCCCAGGGATATC................................................................................................ 23 3 3 0.67 2 0 0 0 2 0 0 0
..............................................................................................................GCCCCTGGGCCTATCCTATTATC............................................................. 23 3 4 0.50 2 0 2 0 0 0 0 0
...............................................................................................................CCCCTGGGCCTATCCTAGACT.............................................................. 21 2 2 0.50 1 0 0 0 0 0 1 0
..............................................................................................................GCCCCTGGGCCTATCCTAGAAAAATC.......................................................... 26 3 2 0.50 1 0 1 0 0 0 0 0
..............................................................................................................GCCCCTGGGCCTATCCTAGAATATA........................................................... 25 3 2 0.50 1 0 1 0 0 0 0 0
...............................................................................................................CCCCTGGGCCTATCCTAGAATTT............................................................ 23 3 3 0.33 1 1 0 0 0 0 0 0
..........................................................................TCTAGGAATGGTCCCAGGGATATC................................................................................................ 24 3 3 0.33 1 0 1 0 0 0 0 0
...............................................................................................................CCCCTGGGCCTATCCTAGAAATC............................................................ 23 3 4 0.25 1 0 1 0 0 0 0 0
..............................................................................................................GCCCCTGTGCCTATCCTAGAAA.............................................................. 22 2 5 0.20 1 1 0 0 0 0 0 0
...............................................................................................................CCCCTGGGCCTATCCTATAAAAA............................................................ 23 3 7 0.14 1 1 0 0 0 0 0 0
.............................................................................AGGTATGGTCCCAGGGAATC................................................................................................. 20 2 7 0.14 1 0 0 0 1 0 0 0
.........................................................GTTTTGTTTGGGTTTGTT....................................................................................................................... 18 0 8 0.13 1 1 0 0 0 0 0 0
..........................................................................TCTAGGTATGGTCCCAGGGAAGA................................................................................................. 23 3 8 0.13 1 0 0 1 0 0 0 0
...............................................................................................................CCCCTGGGCCTATCCTAGAAAAT............................................................ 23 3 9 0.11 1 0 0 0 0 1 0 0
................................................................................TATGGTCGCAGGGATC.................................................................................................. 16 1 10 0.10 1 0 1 0 0 0 0 0

Anti-sense strand reads

GTATACTCACTTTTCGGGTCTTCAGCTGGACTCGACTTTCGTGAGGGTTCCTCAAACCAAAACAAACCCAAACAAGATCCATACCAGGGTCCCTAGGGTCTAGTTTGGTCCGGGGACCCGGATAGGATCTTGGTTGGATTTGAGCGCGTAGTAAGGACCTTGTAGTTCTCACACTTCTGACTTCTAATGGACTC

************************************************...(((((((((.((((((((.((((.(((((((...((...........)).))))))).)))))))))))).)))))))))....*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Generated: 09/01/2015 at 12:07 PM